miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37354_dvi-mir-79:mirbase
Length = 92
Score = 129 bits (65), Expect = 3e-31
Identities = 68/69 (98%)
Strand = Plus / Plus
Query: 2 tgccgtcgctttggcgctttagctgtatgatagatttgaatacttcataaagctagatta 61
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 tgccgttgctttggcgctttagctgtatgatagatttgaatacttcataaagctagatta 69
Query: 62 ccaaagcat 70
|||||||||
Sbjct: 70 ccaaagcat 78
>36778_dmo-mir-79:mirbase
Length = 76
Score = 123 bits (62), Expect = 2e-29
Identities = 68/70 (97%)
Strand = Plus / Plus
Query: 1 ttgccgtcgctttggcgctttagctgtatgatagatttgaatacttcataaagctagatt 60
||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 ttgccgttgctttggcgctttagctgtatgatagatttaaatacttcataaagctagatt 60
Query: 61 accaaagcat 70
||||||||||
Sbjct: 61 accaaagcat 70
>36102_dan-mir-79:mirbase
Length = 91
Score = 115 bits (58), Expect = 4e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 9 gctttggcgctttagctgtatgatagatttgaatacttcataaagctagattaccaaagc 68
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 16 gctttggcgctttagctgtatgatagatttaaatacttcataaagctagattaccaaagc 75
Query: 69 at 70
||
Sbjct: 76 at 77
>37431_dwi-mir-79-1:mirbase
Length = 76
Score = 115 bits (58), Expect = 4e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 9 gctttggcgctttagctgtatgatagatttgaatacttcataaagctagattaccaaagc 68
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 9 gctttggcgctttagctgtatgatagatttgactacttcataaagctagattaccaaagc 68
Query: 69 at 70
||
Sbjct: 69 at 70
>37432_dwi-mir-79-2:mirbase
Length = 76
Score = 115 bits (58), Expect = 4e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 9 gctttggcgctttagctgtatgatagatttgaatacttcataaagctagattaccaaagc 68
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 9 gctttggcgctttagctgtatgatagatttgactacttcataaagctagattaccaaagc 68
Query: 69 at 70
||
Sbjct: 69 at 70
>36180_der-mir-79:mirbase
Length = 92
Score = 101 bits (51), Expect = 7e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 gctttggcgctttagctgtatgatagatttgaa-tacttcataaagctagattaccaaag 67
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 16 gctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaag 75
Query: 68 cat 70
|||
Sbjct: 76 cat 78
>36375_dme-mir-79:mirbase
Length = 97
Score = 101 bits (51), Expect = 7e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 gctttggcgctttagctgtatgatagatttgaa-tacttcataaagctagattaccaaag 67
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 19 gctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaag 78
Query: 68 cat 70
|||
Sbjct: 79 cat 81
>36376_dme-mir-79:mirbase
Length = 97
Score = 101 bits (51), Expect = 7e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 gctttggcgctttagctgtatgatagatttgaa-tacttcataaagctagattaccaaag 67
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 19 gctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaag 78
Query: 68 cat 70
|||
Sbjct: 79 cat 81
>36851_dpe-mir-79:mirbase
Length = 77
Score = 101 bits (51), Expect = 7e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 gctttggcgctttagctgtatgatagatttgaa-tacttcataaagctagattaccaaag 67
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 9 gctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaag 68
Query: 68 cat 70
|||
Sbjct: 69 cat 71
>36927_dps-mir-79:mirbase
Length = 84
Score = 101 bits (51), Expect = 7e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 gctttggcgctttagctgtatgatagatttgaa-tacttcataaagctagattaccaaag 67
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 14 gctttggcgctttagctgtatgatagatttaaaatacttcataaagctagattaccaaag 73
Query: 68 cat 70
|||
Sbjct: 74 cat 76
>37140_dse-mir-79:mirbase
Length = 92
Score = 101 bits (51), Expect = 7e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 gctttggcgctttagctgtatgatagatttgaa-tacttcataaagctagattaccaaag 67
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 16 gctttggcgctttagctgtatgatagatttaaactacttcataaagctagattaccaaag 75
Query: 68 cat 70
|||
Sbjct: 76 cat 78
>35186_aae-mir-79:mirbase
Length = 96
Score = 99.6 bits (50), Expect = 3e-22
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 9 gctttggcgctttagctgtatgatagatttgaatacttcataaagctagattaccaaagc 68
||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 16 gctttggcgctttagctgtatgatagaatttaatatttcataaagctagattaccaaagc 75
Query: 69 at 70
||
Sbjct: 76 at 77
>36016_cqu-mir-79:mirbase
Length = 75
Score = 99.6 bits (50), Expect = 3e-22
Identities = 59/62 (95%)
Strand = Plus / Plus
Query: 9 gctttggcgctttagctgtatgatagatttgaatacttcataaagctagattaccaaagc 68
||||||||||||||||||||||||||| || |||| ||||||||||||||||||||||||
Sbjct: 9 gctttggcgctttagctgtatgatagaatttaatatttcataaagctagattaccaaagc 68
Query: 69 at 70
||
Sbjct: 69 at 70
>37508_dya-mir-79:mirbase
Length = 92
Score = 93.7 bits (47), Expect = 2e-20
Identities = 60/63 (95%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 9 gctttggcgctttagctgtatgatagattt-gaatacttcataaagctagattaccaaag 67
|||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 16 gctttggcgctttagctgtatgatagatttatactacttcataaagctagattaccaaag 75
Query: 68 cat 70
|||
Sbjct: 76 cat 78
>35284_aga-mir-79:mirbase
Length = 94
Score = 89.7 bits (45), Expect = 3e-19
Identities = 62/65 (95%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 8 cgctttggcgctttagctgtatgatag-atttgaa-tacttcataaagctagattaccaa 65
||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||||
Sbjct: 16 cgctttggcgctttagctgtatgatagaatttgaactatttcataaagctagattaccaa 75
Query: 66 agcat 70
|||||
Sbjct: 76 agcat 80
>35520_bmo-mir-9b:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 45 ttcataaagctagattaccaaagcatcg 72
||||||||||||||||||||||||||||
Sbjct: 40 ttcataaagctagattaccaaagcatcg 13
>35533_bmo-mir-79:mirbase
Length = 100
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 45 ttcataaagctagattaccaaagcatcg 72
||||||||||||||||||||||||||||
Sbjct: 55 ttcataaagctagattaccaaagcatcg 82
>35346_ame-mir-9b:mirbase
Length = 92
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 tcataaagctagattaccaaagca 69
||||||||||||||||||||||||
Sbjct: 40 tcataaagctagattaccaaagca 17
>35360_ame-mir-79:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tcataaagctagattaccaaagca 69
||||||||||||||||||||||||
Sbjct: 64 tcataaagctagattaccaaagca 87
>37699_tca-mir-9b:mirbase
Length = 169
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tcataaagctagattaccaaagca 69
||||||||||||||||||||||||
Sbjct: 92 tcataaagctagattaccaaagca 115
>37700_tca-mir-9b:mirbase
Length = 169
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 tcataaagctagattaccaaagca 69
||||||||||||||||||||||||
Sbjct: 92 tcataaagctagattaccaaagca 115
>38743_cte-mir-79:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 tacttcataaagctagattaccaaagc 68
|||||||||||||||| ||||||||||
Sbjct: 55 tacttcataaagctaggttaccaaagc 81
>38729_cte-mir-9:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 42 tacttcataaagctagattaccaaagc 68
|||||||||||||||| ||||||||||
Sbjct: 53 tacttcataaagctaggttaccaaagc 79
>38542_crm-mir-79:mirbase
Length = 120
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 43 acttcataaagctagattaccaaagc 68
||||||||||||||| ||||||||||
Sbjct: 66 acttcataaagctaggttaccaaagc 91
>38099_bma-mir-9:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cttcataaagctagattaccaaagc 68
|||||||||||||| ||||||||||
Sbjct: 49 cttcataaagctaggttaccaaagc 73
>38107_bma-mir-79:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cttcataaagctagattaccaaagc 68
|||||||||||||| ||||||||||
Sbjct: 49 cttcataaagctaggttaccaaagc 73
>38190_cbr-mir-79:mirbase
Length = 93
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 44 cttcataaagctagattaccaaagc 68
|||||||||||||| ||||||||||
Sbjct: 53 cttcataaagctaggttaccaaagc 77
>38623_ppc-mir-79:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 ttcataaagctagattaccaaagc 68
||||||||||||| ||||||||||
Sbjct: 56 ttcataaagctaggttaccaaagc 79
>38316_cel-mir-79:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 ttcataaagctagattaccaaagc 68
||||||||||||| ||||||||||
Sbjct: 58 ttcataaagctaggttaccaaagc 81
>34808_spu-mir-9:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 8e-04
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 21 tagctgtatgatagatttgaatacttcataaagctagattaccaaag 67
||||||||||| ||| | ||| | |||||||||||| |||||||||
Sbjct: 33 tagctgtatgagtgatgtcaatgcatcataaagctaggttaccaaag 79
>34817_spu-mir-79:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 8e-04
Identities = 40/47 (85%)
Strand = Plus / Plus
Query: 21 tagctgtatgatagatttgaatacttcataaagctagattaccaaag 67
||||||||||| ||| | ||| | |||||||||||| |||||||||
Sbjct: 34 tagctgtatgagtgatgtcaatgcatcataaagctaggttaccaaag 80
