miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00446;mir-133;AAPT01020977.1/40333-40419 7222:Drosophila
grimshawi
Length = 87
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 4 aacgctgtatgtagctggttgacatcgggtcagatctatttattcgagtatttggtcccc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aacgctgtatgtagctggttgacatcgggtcagatctatttattcgagtatttggtcccc 60
Query: 64 ttcaaccagctgtagcagtggttgat 89
||||||||||||||||||||||||||
Sbjct: 61 ttcaaccagctgtagcagtggttgat 86
>RF00446;mir-133;AAPP01015693.1/86515-86606 7217:Drosophila
ananassae
Length = 92
Score = 141 bits (71), Expect = 2e-33
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 3 caacgctgtatgtagctggttgacatcgggtcagatctatttattcgagtatttggtccc 62
|||||||||||||||||||||||||||||||||||||||| | ||| || ||||||||||
Sbjct: 5 caacgctgtatgtagctggttgacatcgggtcagatctatcttttcaagcatttggtccc 64
Query: 63 cttcaaccagctgtagcagtggttgat 89
|||||||||||||||||||||||||||
Sbjct: 65 cttcaaccagctgtagcagtggttgat 91
>RF00446;mir-133;AAFS01007554.1/884-971 46245:Drosophila
pseudoobscura pseudoobscura
Length = 88
Score = 133 bits (67), Expect = 4e-31
Identities = 79/83 (95%)
Strand = Plus / Plus
Query: 7 gctgtatgtagctggttgacatcgggtcagatctatttattcgagtatttggtccccttc 66
|||||||||||||||||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 5 gctgtatgtagctggttgacatcgggtcagatctattttatcaagtatttggtccccttc 64
Query: 67 aaccagctgtagcagtggttgat 89
||||||||||| |||||||||||
Sbjct: 65 aaccagctgtatcagtggttgat 87
>RF00446;mir-133;AAQB01006401.1/332784-332872 7260:Drosophila
willistoni
Length = 89
Score = 127 bits (64), Expect = 3e-29
Identities = 83/88 (94%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 3 caacgctgtatgtagctggttgacatcgggtcagatctatttattcg-agtatttggtcc 61
|||| ||| |||||||||||||||||||||||||||||||||||| | || |||||||||
Sbjct: 1 caacactgaatgtagctggttgacatcgggtcagatctatttatttgaagcatttggtcc 60
Query: 62 ccttcaaccagctgtagcagtggttgat 89
||||||||||||||||||||||||||||
Sbjct: 61 ccttcaaccagctgtagcagtggttgat 88
>RF00446;mir-133;AAPU01010689.1/170290-170375 7230:Drosophila
mojavensis
Length = 86
Score = 123 bits (62), Expect = 4e-28
Identities = 81/86 (94%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 4 aacgctgtatgtagctggttgacatcgggtcagatctatttattcgagtatttggtcccc 63
|||||||| ||||| |||||||||||||||||||||| ||| |||||| |||||||||||
Sbjct: 1 aacgctgtgtgtagttggttgacatcgggtcagatctgttt-ttcgagaatttggtcccc 59
Query: 64 ttcaaccagctgtagcagtggttgat 89
||||||||||||||||||||||||||
Sbjct: 60 ttcaaccagctgtagcagtggttgat 85
>RF00446;mir-133;AASW01052175.1/117-202 7240:Drosophila simulans
Length = 86
Score = 97.6 bits (49), Expect = 2e-20
Identities = 78/85 (91%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 4 aacgctgtatgtagctggttgacatcgggtcagatctatttattcgagtatttggtcccc 63
|||||||| |||||||||||||||||||||||||||| ||| || || |||||||||||
Sbjct: 1 aacgctgtgtgtagctggttgacatcgggtcagatctgttt-tttaagcatttggtcccc 59
Query: 64 ttcaaccagctgtag-cagtggttg 87
||||||||||||||| |||||||||
Sbjct: 60 ttcaaccagctgtagccagtggttg 84
>RF00446;mir-133;AAGE02024522.1/50344-50238 7159:Aedes aegypti
(yellow fever mosquito)
Length = 107
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 53 atttggtccccttcaaccagctgtagcagtg 83
|||||||||||||||||||||||||||||||
Sbjct: 70 atttggtccccttcaaccagctgtagcagtg 100
>RF00446;mir-133;ABKQ02016003.1/5336-5232 377270:Anopheles gambiae
S
Length = 105
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 53 atttggtccccttcaaccagctgtagcagtg 83
|||||||||||||||||||||||||||||||
Sbjct: 68 atttggtccccttcaaccagctgtagcagtg 98
>RF00446;mir-133;AAQQ01431588.1/1752-1838 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 atttggtccccttcaaccagctgtagc 79
|||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAIY01559715.1/853-939 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 atttggtccccttcaaccagctgtagc 79
|||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAVX01020289.1/2798-2712 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 atttggtccccttcaaccagctgtagc 79
|||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAVX01266048.1/613-699 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 atttggtccccttcaaccagctgtagc 79
|||||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgtagc 76
>RF00446;mir-133;AAZO01007144.1/88847-88936 121224:Pediculus
humanus corporis (human body louse)
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 34/35 (97%), Gaps = 1/35 (2%)
Strand = Plus / Plus
Query: 45 attcgagt-atttggtccccttcaaccagctgtag 78
|||||||| ||||||||||||||||||||||||||
Sbjct: 44 attcgagtcatttggtccccttcaaccagctgtag 78
>RF00446;mir-133;ABLF01021874.1/5675-5746 7029:Acyrthosiphon pisum
(pea aphid)
Length = 72
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 53 atttggtccccttcaaccagctgtagc 79
|||||||||||||||||||||||||||
Sbjct: 35 atttggtccccttcaaccagctgtagc 61
>RF00446;mir-133;AADN02018284.1/53-140 9031:Gallus gallus
(chicken)
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 54 tttggtccccttcaaccagctgtagcagtg 83
||||||||||||||||||||| ||||||||
Sbjct: 52 tttggtccccttcaaccagctatagcagtg 81
>RF00446;mir-133;BABH01010529.1/47109-47021 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atttggtccccttcaaccagctgtag 78
||||||||||||||||||||||||||
Sbjct: 52 atttggtccccttcaaccagctgtag 77
>RF00446;mir-133;AADG05005567.1/35761-35851 7460:Apis mellifera
(honey bee)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atttggtccccttcaaccagctgtag 78
||||||||||||||||||||||||||
Sbjct: 54 atttggtccccttcaaccagctgtag 79
>RF00446;mir-133;AAJJ01000046.1/77209-77292 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 52 tatttggtccccttcaaccagctgt 76
|||||||||||||||||||||||||
Sbjct: 46 tatttggtccccttcaaccagctgt 70
>RF00446;mir-133;AAGJ02035428.1/18887-18799
7668:Strongylocentrotus purpuratus
Length = 89
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 53 atttggtccccttcaaccagctgtagca 80
||||||||||||||||||||| ||||||
Sbjct: 52 atttggtccccttcaaccagccgtagca 79
>RF00446;mir-133;AAWZ01040028.1/1304-1218 28377:Anolis
carolinensis (green anole)
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 atttggtccccttcaaccagctgt 76
||||||||||||||||||||||||
Sbjct: 50 atttggtccccttcaaccagctgt 73
>RF00446;mir-133;AAWU01037751.1/37190-37294 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 atttggtccccttcaaccagctgt 76
||||||||||||||||||||||||
Sbjct: 71 atttggtccccttcaaccagctgt 94
>RF00446;mir-133;ABJB010482881.1/10984-10878 6945:Ixodes
scapularis (black-legged tick)
Length = 107
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 atttggtccccttcaaccagctgt 76
||||||||||||||||||||||||
Sbjct: 70 atttggtccccttcaaccagctgt 93
>RF00446;mir-133;AADN02043827.1/38919-38834 9031:Gallus gallus
(chicken)
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 atttggtccccttcaaccagctg 75
|||||||||||||||||||||||
Sbjct: 49 atttggtccccttcaaccagctg 71
>RF00446;mir-133;AABS01000844.1/21320-21411 7719:Ciona
intestinalis
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 tttggtccccttcaaccagctg 75
||||||||||||||||||||||
Sbjct: 56 tttggtccccttcaaccagctg 77
