miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00706;mir-263;AAPU01010625.1/4665-4753 7230:Drosophila
mojavensis
Length = 89
Score = 159 bits (80), Expect = 7e-39
Identities = 86/88 (97%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggttattttaacacgcccgtgat 60
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 2 atctcggcacagttaatggcactggaagaattcacggggtttttctaacacgcccgtgat 61
Query: 61 ctcttagtggcatctatggtgcgggata 88
||||||||||||||||||||||||||||
Sbjct: 62 ctcttagtggcatctatggtgcgggata 89
>RF00706;mir-263;AC011065.6/94391-94302 7227:Drosophila
melanogaster (fruit fly)
Length = 90
Score = 119 bits (60), Expect = 6e-27
Identities = 79/84 (94%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 atctcggcacagttaatggcactggaagaattcacggggttattttaacac-gcccgtga 59
|||||||||||||||||||||||||||||||||||||||| ||||| | || |||||||
Sbjct: 2 atctcggcacagttaatggcactggaagaattcacggggtaatttttatacaacccgtga 61
Query: 60 tctcttagtggcatctatggtgcg 83
||||||||||||||||||||||||
Sbjct: 62 tctcttagtggcatctatggtgcg 85
>RF00706;mir-263;AADE01000074.1/40884-40796 46245:Drosophila
pseudoobscura pseudoobscura
Length = 89
Score = 109 bits (55), Expect = 6e-24
Identities = 78/83 (93%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 5 cggcacagttaatggcactggaagaattcacggggttattttaacac-gcccgtgatctc 63
||||||||||||||||||||||||||||||||||||| ||| || || |||||||||||
Sbjct: 6 cggcacagttaatggcactggaagaattcacggggtt-tttcaatacaacccgtgatctc 64
Query: 64 ttagtggcatctatggtgcggga 86
|||||||||||||||||||||||
Sbjct: 65 ttagtggcatctatggtgcggga 87
>RF00706;mir-263;AAAB01008944.1/325742-325831 180454:Anopheles
gambiae str. PEST
Length = 90
Score = 65.9 bits (33), Expect = 8e-11
Identities = 55/61 (90%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 14 taatggcactggaagaattcacggggttatttt-aacacgcccgtgatctcttagtggca 72
||||||||||||||||||||||||| || |||| |||| |||||| |||||||||||||
Sbjct: 15 taatggcactggaagaattcacgggatttttttcaacattcccgtgttctcttagtggca 74
Query: 73 t 73
|
Sbjct: 75 t 75
>RF00706;mir-263;BAAB01106279.1/2818-2907 7091:Bombyx mori
(domestic silkworm)
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggttatttta-acacgcccgtgatctcttagtggcat 73
|||||||||||||||||||||||| | | |||| | | |||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggttcagtttatatattcccgtgatctcttagtggcat 75
Query: 74 c 74
|
Sbjct: 76 c 76
>RF00706;mir-263;AAJJ01000157.1/103377-103289 7070:Tribolium
castaneum (red flour beetle)
Length = 89
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggtt 41
|||||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggggtt 42
>RF00706;mir-263;ABJB010285488.1/4151-4241 6945:Ixodes scapularis
(black-legged tick)
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggt 40
||||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacggggt 41
>RF00706;mir-263;AAZX01007729.1/30973-30881 7425:Nasonia
vitripennis (jewel wasp)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacgggg 39
|||||||||||||||||||||||||
Sbjct: 17 aatggcactggaagaattcacgggg 41
>RF00706;mir-263;AADG05003940.1/44836-44746 7460:Apis mellifera
(honey bee)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacgggg 39
|||||||||||||||||||||||||
Sbjct: 16 aatggcactggaagaattcacgggg 40
>RF00706;mir-263;AAWU01014939.1/4076-3988 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 89
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 taatggcactggaagaattcacggg 38
|||||||||||||||||||||||||
Sbjct: 15 taatggcactggaagaattcacggg 39
>RF00706;mir-263;AAGE02027430.1/4828-4738 7159:Aedes aegypti
(yellow fever mosquito)
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 taatggcactggaagaattcacggg 38
|||||||||||||||||||||||||
Sbjct: 15 taatggcactggaagaattcacggg 39
>RF00706;mir-263;ABLF01028761.1/10726-10634 7029:Acyrthosiphon
pisum (pea aphid)
Length = 93
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 aatggcactggaagaattcacggggt 40
|||||||||| |||||||||||||||
Sbjct: 16 aatggcactgaaagaattcacggggt 41
