miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37367_dvi-mir-274:mirbase
Length = 105
Score = 69.9 bits (35), Expect = 3e-13
Identities = 73/82 (89%), Gaps = 4/82 (4%)
Strand = Plus / Plus
Query: 1 tcggtttgtgaccgacactaacgggtagttaaagggcatcctcgcattctgctggcttac 60
|||||||||||||||||||||||||||||| ||||| ||||| || | |||| ||||
Sbjct: 14 tcggtttgtgaccgacactaacgggtagtt--ggggca-cctcgaatac-gctgttttac 69
Query: 61 tcgtttttgcgatcacaaattc 82
||||||||||||||||||||||
Sbjct: 70 tcgtttttgcgatcacaaattc 91
>36790_dmo-mir-274:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tcggtttgtgaccgacactaacgggtagtt 30
||||||||||||||||||||||||||||||
Sbjct: 3 tcggtttgtgaccgacactaacgggtagtt 32
>37446_dwi-mir-274:mirbase
Length = 105
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 ttactcgtttttgcgatcacaaattc 82
||||||||||||||||||||||||||
Sbjct: 70 ttactcgtttttgcgatcacaaattc 95
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tttgtgaccgacactaacgggtagt 29
|||||||||||||||||||||||||
Sbjct: 14 tttgtgaccgacactaacgggtagt 38
>36409_dme-mir-274:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ttactcgtttttgcgatcacaaatt 81
|||||||||||||||||||||||||
Sbjct: 61 ttactcgtttttgcgatcacaaatt 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tttgtgaccgacactaacgggta 27
|||||||||||||||||||||||
Sbjct: 20 tttgtgaccgacactaacgggta 42
>36410_dme-mir-274:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 ttactcgtttttgcgatcacaaatt 81
|||||||||||||||||||||||||
Sbjct: 61 ttactcgtttttgcgatcacaaatt 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tttgtgaccgacactaacgggta 27
|||||||||||||||||||||||
Sbjct: 20 tttgtgaccgacactaacgggta 42
>36115_dan-mir-274:mirbase
Length = 96
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ttactcgtttttgcgatcacaaat 80
||||||||||||||||||||||||
Sbjct: 57 ttactcgtttttgcgatcacaaat 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tttgtgaccgacactaacgggta 27
|||||||||||||||||||||||
Sbjct: 15 tttgtgaccgacactaacgggta 37
>36193_der-mir-274:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ttactcgtttttgcgatcacaaat 80
||||||||||||||||||||||||
Sbjct: 58 ttactcgtttttgcgatcacaaat 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tttgtgaccgacactaacgggta 27
|||||||||||||||||||||||
Sbjct: 17 tttgtgaccgacactaacgggta 39
>37153_dse-mir-274:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ttactcgtttttgcgatcacaaat 80
||||||||||||||||||||||||
Sbjct: 58 ttactcgtttttgcgatcacaaat 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tttgtgaccgacactaacgggta 27
|||||||||||||||||||||||
Sbjct: 17 tttgtgaccgacactaacgggta 39
>37522_dya-mir-274:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ttactcgtttttgcgatcacaaat 80
||||||||||||||||||||||||
Sbjct: 58 ttactcgtttttgcgatcacaaat 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tttgtgaccgacactaacgggta 27
|||||||||||||||||||||||
Sbjct: 17 tttgtgaccgacactaacgggta 39
>36867_dpe-mir-274:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tttgtgaccgacactaacgggta 27
|||||||||||||||||||||||
Sbjct: 17 tttgtgaccgacactaacgggta 39
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tactcgtttttgcgatcacaa 78
|||||||||||||||||||||
Sbjct: 57 tactcgtttttgcgatcacaa 77
>36946_dps-mir-274:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tttgtgaccgacactaacgggta 27
|||||||||||||||||||||||
Sbjct: 20 tttgtgaccgacactaacgggta 42
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 tactcgtttttgcgatcacaa 78
|||||||||||||||||||||
Sbjct: 60 tactcgtttttgcgatcacaa 80
>35547_bmo-mir-274:mirbase
Length = 95
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 3 ggtttgtgaccgacactaacggg 25
|||||||||||| ||||||||||
Sbjct: 21 ggtttgtgaccgtcactaacggg 43
