miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00822;mir-274;AAPT01020611.1/127253-127143 7222:Drosophila
grimshawi
Length = 111
Score = 163 bits (82), Expect = 4e-40
Identities = 82/82 (100%)
Strand = Plus / Plus
Query: 1 tcggtttgtgaccgacactaacgggtagttaaagggcatcctcgcattctgctggcttac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 tcggtttgtgaccgacactaacgggtagttaaagggcatcctcgcattctgctggcttac 75
Query: 61 tcgtttttgcgatcacaaattc 82
||||||||||||||||||||||
Sbjct: 76 tcgtttttgcgatcacaaattc 97
>RF00822;mir-274;AANI01017486.1/215294-215400 7244:Drosophila
virilis
Length = 107
Score = 69.9 bits (35), Expect = 5e-12
Identities = 73/82 (89%), Gaps = 4/82 (4%)
Strand = Plus / Plus
Query: 1 tcggtttgtgaccgacactaacgggtagttaaagggcatcctcgcattctgctggcttac 60
|||||||||||||||||||||||||||||| ||||| ||||| || | |||| ||||
Sbjct: 16 tcggtttgtgaccgacactaacgggtagtt--ggggca-cctcgaatac-gctgttttac 71
Query: 61 tcgtttttgcgatcacaaattc 82
||||||||||||||||||||||
Sbjct: 72 tcgtttttgcgatcacaaattc 93
>RF00822;mir-274;AAPU01011627.1/22605-22713 7230:Drosophila
mojavensis
Length = 109
Score = 60.0 bits (30), Expect = 4e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tcggtttgtgaccgacactaacgggtagtt 30
||||||||||||||||||||||||||||||
Sbjct: 16 tcggtttgtgaccgacactaacgggtagtt 45
>RF00822;mir-274;AAQB01007682.1/34817-34703 7260:Drosophila
willistoni
Length = 115
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 ttactcgtttttgcgatcacaaattc 82
||||||||||||||||||||||||||
Sbjct: 76 ttactcgtttttgcgatcacaaattc 101
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 5 tttgtgaccgacactaacgggtagt 29
|||||||||||||||||||||||||
Sbjct: 20 tttgtgaccgacactaacgggtagt 44
>RF00822;mir-274;AAPP01019289.1/330187-330287 7217:Drosophila
ananassae
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ttactcgtttttgcgatcacaaat 80
||||||||||||||||||||||||
Sbjct: 62 ttactcgtttttgcgatcacaaat 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tttgtgaccgacactaacgggta 27
|||||||||||||||||||||||
Sbjct: 20 tttgtgaccgacactaacgggta 42
>RF00822;mir-274;AAKO01000079.1/37948-38047 7238:Drosophila
sechellia
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 ttactcgtttttgcgatcacaaat 80
||||||||||||||||||||||||
Sbjct: 61 ttactcgtttttgcgatcacaaat 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tttgtgaccgacactaacgggta 27
|||||||||||||||||||||||
Sbjct: 20 tttgtgaccgacactaacgggta 42
>RF00822;mir-274;AADE01002814.1/8876-8780 46245:Drosophila
pseudoobscura pseudoobscura
Length = 97
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tttgtgaccgacactaacgggta 27
|||||||||||||||||||||||
Sbjct: 20 tttgtgaccgacactaacgggta 42
