miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36121_dan-mir-279:mirbase
Length = 89
Score = 133 bits (67), Expect = 2e-32
Identities = 83/87 (95%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 5 tactgtttttagtgggtgagggtccagtgtttcacattgtttatttgtatttgtgactag 64
||||||||||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct: 4 tactgtttttagtgggtgagggtccagtgtttcacattgatt-tctgtatttgtgactag 62
Query: 65 atccacactcattaaaaacggtagttc 91
||||||||||||||| |||||||||||
Sbjct: 63 atccacactcattaataacggtagttc 89
>36796_dmo-mir-279:mirbase
Length = 93
Score = 131 bits (66), Expect = 9e-32
Identities = 84/89 (94%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 5 tactgtttttagtgggtgagggtccagtgtttcacattgtttattt--gtatttgtgact 62
|||||||||||||| ||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 5 tactgtttttagtgagtgagggtccagtgtttcacattgtttgcttaagtatttgtgact 64
Query: 63 agatccacactcattaaaaacggtagttc 91
|||||||||||||||||||||||||||||
Sbjct: 65 agatccacactcattaaaaacggtagttc 93
>36199_der-mir-279:mirbase
Length = 93
Score = 123 bits (62), Expect = 2e-29
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 5 tactgtttttagtgggtgagggtccagtgtttcacattg--tttatttgtatttgtgact 62
|||||||||||||||||| |||||||||||||||||||| ||| || ||||||||||||
Sbjct: 5 tactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgtgact 64
Query: 63 agatccacactcattaaaaacggtagttc 91
||||||||||||||||| |||||||||||
Sbjct: 65 agatccacactcattaataacggtagttc 93
>36421_dme-mir-279:mirbase
Length = 100
Score = 123 bits (62), Expect = 2e-29
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 5 tactgtttttagtgggtgagggtccagtgtttcacattg--tttatttgtatttgtgact 62
|||||||||||||||||| |||||||||||||||||||| ||| || ||||||||||||
Sbjct: 12 tactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgtgact 71
Query: 63 agatccacactcattaaaaacggtagttc 91
||||||||||||||||| |||||||||||
Sbjct: 72 agatccacactcattaataacggtagttc 100
>36422_dme-mir-279:mirbase
Length = 100
Score = 123 bits (62), Expect = 2e-29
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 5 tactgtttttagtgggtgagggtccagtgtttcacattg--tttatttgtatttgtgact 62
|||||||||||||||||| |||||||||||||||||||| ||| || ||||||||||||
Sbjct: 12 tactgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgtgact 71
Query: 63 agatccacactcattaaaaacggtagttc 91
||||||||||||||||| |||||||||||
Sbjct: 72 agatccacactcattaataacggtagttc 100
>36873_dpe-mir-279:mirbase
Length = 93
Score = 123 bits (62), Expect = 2e-29
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 5 tactgtttttagtgggtgagggtccagtgtttcacattg--tttatttgtatttgtgact 62
|||||||||||||| |||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 5 tactgtttttagtgagtgagggtccagtgtttcacattgattttcttagtatttgtgact 64
Query: 63 agatccacactcattaaaaacggtagttc 91
||||||||||||||||| |||||||||||
Sbjct: 65 agatccacactcattaataacggtagttc 93
>36953_dps-mir-279:mirbase
Length = 95
Score = 123 bits (62), Expect = 2e-29
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 5 tactgtttttagtgggtgagggtccagtgtttcacattg--tttatttgtatttgtgact 62
|||||||||||||| |||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 7 tactgtttttagtgagtgagggtccagtgtttcacattgattttcttagtatttgtgact 66
Query: 63 agatccacactcattaaaaacggtagttc 91
||||||||||||||||| |||||||||||
Sbjct: 67 agatccacactcattaataacggtagttc 95
>37528_dya-mir-279:mirbase
Length = 93
Score = 123 bits (62), Expect = 2e-29
Identities = 83/89 (93%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 5 tactgtttttagtgggtgagggtccagtgtttcacattg--tttatttgtatttgtgact 62
||||||||||||||||||||||||||||| ||||||||| ||| || ||||||||||||
Sbjct: 5 tactgtttttagtgggtgagggtccagtgcttcacattgattttcttagtatttgtgact 64
Query: 63 agatccacactcattaaaaacggtagttc 91
||||||||||||||||| |||||||||||
Sbjct: 65 agatccacactcattaataacggtagttc 93
>37159_dse-mir-279:mirbase
Length = 93
Score = 119 bits (60), Expect = 4e-28
Identities = 81/87 (93%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 7 ctgtttttagtgggtgagggtccagtgtttcacattg--tttatttgtatttgtgactag 64
|||||||||||||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 7 ctgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgtgactag 66
Query: 65 atccacactcattaaaaacggtagttc 91
||||||||||||||| |||||||||||
Sbjct: 67 atccacactcattaataacggtagttc 93
>37237_dsi-mir-279:mirbase
Length = 93
Score = 119 bits (60), Expect = 4e-28
Identities = 81/87 (93%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 7 ctgtttttagtgggtgagggtccagtgtttcacattg--tttatttgtatttgtgactag 64
|||||||||||||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 7 ctgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgtgactag 66
Query: 65 atccacactcattaaaaacggtagttc 91
||||||||||||||| |||||||||||
Sbjct: 67 atccacactcattaataacggtagttc 93
>37452_dwi-mir-279:mirbase
Length = 91
Score = 119 bits (60), Expect = 4e-28
Identities = 82/88 (93%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 5 tactgtttttagtgggtgagggtccagtgtttcacattgtttattt-gtatttgtgacta 63
|||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 4 tactgtttttagtgagtgagggtccagtgtttcacattaaatatttagtatttgtgacta 63
Query: 64 gatccacactcattaaaaacggtagttc 91
|||||||||||||||| |||||||||||
Sbjct: 64 gatccacactcattaataacggtagttc 91
>37373_dvi-mir-279:mirbase
Length = 94
Score = 111 bits (56), Expect = 9e-26
Identities = 82/90 (91%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 5 tactgtttttagtgggtgagggtccagtgtttcacattgtttattt---gtatttgtgac 61
|||||||||||||| ||||||||||||||||||||||| || ||| |||||||||||
Sbjct: 5 tactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttgtgac 64
Query: 62 tagatccacactcattaaaaacggtagttc 91
|||||||||||||||||| |||||||||||
Sbjct: 65 tagatccacactcattaacaacggtagttc 94
>35304_aga-mir-279:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 ttgtgactagatccacactcattaa 79
|||||||||||||||||||||||||
Sbjct: 53 ttgtgactagatccacactcattaa 77
>35383_ame-mir-279:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 ttgtgactagatccacactcattaa 79
|||||||||||||||||||||||||
Sbjct: 64 ttgtgactagatccacactcattaa 88
>35209_aae-mir-279:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tgtgactagatccacactcattaa 79
||||||||||||||||||||||||
Sbjct: 59 tgtgactagatccacactcattaa 82
>36037_cqu-mir-279:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tgtgactagatccacactcattaa 79
||||||||||||||||||||||||
Sbjct: 47 tgtgactagatccacactcattaa 70
>37662_nvi-mir-279:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tgtgactagatccacactcattaa 79
||||||||||||||||||||||||
Sbjct: 65 tgtgactagatccacactcattaa 88
>37771_tca-mir-279a:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 gtgactagatccacactcattaa 79
|||||||||||||||||||||||
Sbjct: 42 gtgactagatccacactcattaa 64
>37772_tca-mir-279a:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 gtgactagatccacactcattaa 79
|||||||||||||||||||||||
Sbjct: 42 gtgactagatccacactcattaa 64
