miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00754;mir-279;AASU01038261.1/2067-2161 7240:Drosophila simulans
Length = 95
Score = 119 bits (60), Expect = 6e-27
Identities = 81/87 (93%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 7 ctgtttttagtgggtgagggtccagtgtttcacattg--tttatttgtatttgtgactag 64
|||||||||||||||| |||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 9 ctgtttttagtgggtgggggtccagtgtttcacattgattttcttagtatttgtgactag 68
Query: 65 atccacactcattaaaaacggtagttc 91
||||||||||||||| |||||||||||
Sbjct: 69 atccacactcattaataacggtagttc 95
>RF00754;mir-279;AAQB01008976.1/68668-68761 7260:Drosophila
willistoni
Length = 94
Score = 119 bits (60), Expect = 6e-27
Identities = 82/88 (93%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 5 tactgtttttagtgggtgagggtccagtgtttcacattgtttattt-gtatttgtgacta 63
|||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||
Sbjct: 7 tactgtttttagtgagtgagggtccagtgtttcacattaaatatttagtatttgtgacta 66
Query: 64 gatccacactcattaaaaacggtagttc 91
|||||||||||||||| |||||||||||
Sbjct: 67 gatccacactcattaataacggtagttc 94
>RF00754;mir-279;AANI01014375.1/46325-46420 7244:Drosophila
virilis
Length = 96
Score = 111 bits (56), Expect = 2e-24
Identities = 82/90 (91%), Gaps = 3/90 (3%)
Strand = Plus / Plus
Query: 5 tactgtttttagtgggtgagggtccagtgtttcacattgtttattt---gtatttgtgac 61
|||||||||||||| ||||||||||||||||||||||| || ||| |||||||||||
Sbjct: 7 tactgtttttagtgagtgagggtccagtgtttcacattcgttttttcaagtatttgtgac 66
Query: 62 tagatccacactcattaaaaacggtagttc 91
|||||||||||||||||| |||||||||||
Sbjct: 67 tagatccacactcattaacaacggtagttc 96
>RF00948;mir-996;AADG05007607.1/6578-6670 7460:Apis mellifera
(honey bee)
Length = 93
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 44 tttatttgtatttgtgactagatccacactcat 76
||||||| |||| ||||||||||||||||||||
Sbjct: 44 tttatttttattcgtgactagatccacactcat 76
>RF00754;mir-279;AADG05007607.1/6579-6668 7460:Apis mellifera
(honey bee)
Length = 90
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 44 tttatttgtatttgtgactagatccacactcat 76
||||||| |||| ||||||||||||||||||||
Sbjct: 43 tttatttttattcgtgactagatccacactcat 75
>RF00754;mir-279;AADG05002101.1/44929-44844 7460:Apis mellifera
(honey bee)
Length = 86
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 ttgtgactagatccacactcattaa 79
|||||||||||||||||||||||||
Sbjct: 50 ttgtgactagatccacactcattaa 74
>RF00754;mir-279;ABKP02025583.1/99061-99151 377271:Anopheles
gambiae M
Length = 91
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 55 ttgtgactagatccacactcattaa 79
|||||||||||||||||||||||||
Sbjct: 55 ttgtgactagatccacactcattaa 79
>RF00754;mir-279;AAZX01001678.1/20489-20404 7425:Nasonia
vitripennis (jewel wasp)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tgtgactagatccacactcattaa 79
||||||||||||||||||||||||
Sbjct: 51 tgtgactagatccacactcattaa 74
>RF00754;mir-279;AAWU01001985.1/8444-8349 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tgtgactagatccacactcattaa 79
||||||||||||||||||||||||
Sbjct: 58 tgtgactagatccacactcattaa 81
>RF00754;mir-279;AAGE02017556.1/117017-116925 7159:Aedes aegypti
(yellow fever mosquito)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tgtgactagatccacactcattaa 79
||||||||||||||||||||||||
Sbjct: 58 tgtgactagatccacactcattaa 81
>RF00754;mir-279;AAJJ01000015.1/255293-255381 7070:Tribolium
castaneum (red flour beetle)
Length = 89
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 gtgactagatccacactcattaa 79
|||||||||||||||||||||||
Sbjct: 55 gtgactagatccacactcattaa 77
