miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00788;mir-287;AAPU01010664.1/17553-17645 7230:Drosophila
mojavensis
Length = 93
Score = 127 bits (64), Expect = 2e-29
Identities = 70/72 (97%)
Strand = Plus / Plus
Query: 2 gcataatgcttgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgttt 61
|||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 22 gcataatgtttgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgttt 81
Query: 62 gcacaactgtga 73
||||||||||||
Sbjct: 82 gcacaactgtga 93
>RF00788;mir-287;AAPP01015675.1/1283611-1283521 7217:Drosophila
ananassae
Length = 91
Score = 115 bits (58), Expect = 8e-26
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgt 71
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 30 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgt 89
Query: 72 ga 73
||
Sbjct: 90 ga 91
>RF00788;mir-287;AAFS01000718.1/2117-2027 46245:Drosophila
pseudoobscura pseudoobscura
Length = 91
Score = 111 bits (56), Expect = 1e-24
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 14 aaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgtga 73
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 32 aaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgtga 91
>RF00788;mir-287;AAPQ01007040.1/1493379-1493287 7220:Drosophila
erecta
Length = 93
Score = 101 bits (51), Expect = 1e-21
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactg 70
||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||
Sbjct: 32 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactg 90
>RF00788;mir-287;AAGH01003987.1/3230-3289 7240:Drosophila simulans
Length = 60
Score = 97.6 bits (49), Expect = 2e-20
Identities = 52/53 (98%)
Strand = Plus / Minus
Query: 13 gaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcac 65
|||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 56 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 4
>RF00788;mir-287;AAQB01006734.1/267050-266959 7260:Drosophila
willistoni
Length = 92
Score = 95.6 bits (48), Expect = 7e-20
Identities = 54/56 (96%)
Strand = Plus / Plus
Query: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaa 67
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 30 tgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcacaa 85
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 23 acacatttacaatatttgtaaatgtgt 49
|||||||||||||| ||||||||||||
Sbjct: 67 acacatttacaataattgtaaatgtgt 41
>RF00788;mir-287;AAEU02000290.1/178244-178333 7245:Drosophila
yakuba
Length = 90
Score = 91.7 bits (46), Expect = 1e-18
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgt 71
|||||||||||||||||||||| || ||||||||||||||||||||||||||| |||||
Sbjct: 29 tgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgcatgactgt 88
Query: 72 ga 73
||
Sbjct: 89 ga 90