miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36336_dme-mir-5:mirbase
Length = 69
Score = 137 bits (69), Expect = 1e-33
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgagttgtttcctaacatatcacagtgattttcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgagttgtttcctaacatatcacagtgattttcct 60
Query: 61 ttataacgc 69
|||||||||
Sbjct: 61 ttataacgc 69
>36160_der-mir-5:mirbase
Length = 64
Score = 111 bits (56), Expect = 6e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatgagttgtttcctaacatatcacagtgattttccttt 62
||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgttgttccctaacatatcacagtgattttccttt 60
Query: 63 ataa 66
||||
Sbjct: 61 ataa 64
>37120_dse-mir-5:mirbase
Length = 64
Score = 111 bits (56), Expect = 6e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatgagttgtttcctaacatatcacagtgattttccttt 62
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgagttgttcccgaacatatcacagtgattttccttt 60
Query: 63 ataa 66
||||
Sbjct: 61 ataa 64
>37488_dya-mir-5:mirbase
Length = 64
Score = 103 bits (52), Expect = 2e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatgagttgtttcctaacatatcacagtgattttccttt 62
||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgttattccctaacatatcacagtgattttccttt 60
Query: 63 ataa 66
||||
Sbjct: 61 ataa 64
>37198_dsi-mir-5:mirbase
Length = 63
Score = 101 bits (51), Expect = 6e-23
Identities = 61/63 (96%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatgagttgtttcctaacatatcacagtgattttccttt 62
|||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgagttg-ttcccaacatatcacagtgattttccttt 59
Query: 63 ata 65
|||
Sbjct: 60 ata 62
>36831_dpe-mir-5:mirbase
Length = 72
Score = 67.9 bits (34), Expect = 8e-13
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgagttgttt---cctaacatatcacagtgatttt 57
||||||||||||||||||||||||||| ||| || | | ||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgatttt 60
Query: 58 cctttata 65
||||||||
Sbjct: 61 cctttata 68
>36907_dps-mir-5:mirbase
Length = 72
Score = 67.9 bits (34), Expect = 8e-13
Identities = 60/68 (88%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgagttgttt---cctaacatatcacagtgatttt 57
||||||||||||||||||||||||||| ||| || | | ||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttaattcaccgttacatatcacagtgatttt 60
Query: 58 cctttata 65
||||||||
Sbjct: 61 cctttata 68
>36082_dan-mir-5:mirbase
Length = 67
Score = 65.9 bits (33), Expect = 3e-12
Identities = 59/67 (88%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 3 taaaaggaacgatcgttgtgatatgagttgtttccta---acatatcacagtgattttcc 59
||||||||||||||||||||||||| ||| | ||| ||||||||||||||||||||
Sbjct: 1 taaaaggaacgatcgttgtgatatgcgtttatccctcgttacatatcacagtgattttcc 60
Query: 60 tttataa 66
|||||||
Sbjct: 61 tttataa 67
>37334_dvi-mir-5:mirbase
Length = 70
Score = 65.9 bits (33), Expect = 3e-12
Identities = 59/67 (88%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 2 ctaaaaggaacgatcgttgtgatatgagttgttt---cctaacatatcacagtgattttc 58
|||||||||||||||||||||||||| ||| || | | |||||||||||||||||||
Sbjct: 1 ctaaaaggaacgatcgttgtgatatgcgttcattaaccgttacatatcacagtgattttc 60
Query: 59 ctttata 65
|||||||
Sbjct: 61 ctttata 67
>36244_dgr-mir-5-1:mirbase
Length = 73
Score = 63.9 bits (32), Expect = 1e-11
Identities = 60/69 (86%), Gaps = 4/69 (5%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgagttgtt----tcctaacatatcacagtgattt 56
||||||||||||||||||||||||||| ||| | || | |||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattt 60
Query: 57 tcctttata 65
|||||||||
Sbjct: 61 tcctttata 69
>36245_dgr-mir-5-2:mirbase
Length = 73
Score = 63.9 bits (32), Expect = 1e-11
Identities = 60/69 (86%), Gaps = 4/69 (5%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgagttgtt----tcctaacatatcacagtgattt 56
||||||||||||||||||||||||||| ||| | || | |||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttcattaaatcgttacatatcacagtgattt 60
Query: 57 tcctttata 65
|||||||||
Sbjct: 61 tcctttata 69
>36758_dmo-mir-5:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 2e-10
Identities = 59/68 (86%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatgagttgtt---tcctaacatatcacagtgatttt 57
||||||||||||||||||||||||||| ||| | | | ||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatgcgttaatcgaccgttacatatcacagtgatttt 60
Query: 58 cctttata 65
||||||||
Sbjct: 61 cctttata 68
>37409_dwi-mir-5:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 gctaaaaggaacgatcgttgtgatatg 27
|||||||||||||||||||||||||||
Sbjct: 1 gctaaaaggaacgatcgttgtgatatg 27
