miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AAPU01010182.1/5430-5508 7230:Drosophila mojavensis
Length = 79
Score = 105 bits (53), Expect = 9e-23
Identities = 74/79 (93%), Gaps = 4/79 (5%)
Strand = Plus / Plus
Query: 7 atctgttcacatcttaccgggcagcattagat-ccttttt---ataactctaatactgtc 62
|||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 1 atctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtc 60
Query: 63 aggtaaagatgtcgtccgt 81
|||||||||||||||||||
Sbjct: 61 aggtaaagatgtcgtccgt 79
>RF00241;mir-8;AAJJ01001355.1/29616-29540 7070:Tribolium castaneum
(red flour beetle)
Length = 77
Score = 81.8 bits (41), Expect = 1e-15
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 9 ctgttcacatcttaccgggcagcattagatc-ctttttataactctaatactgtcaggta 67
||||| |||||||||||||||||||||||| | ||||||| |||||||||||||||||
Sbjct: 3 ctgttaacatcttaccgggcagcattagattacattttatacttctaatactgtcaggta 62
Query: 68 aagatgtcgtccg 80
|||||||| ||||
Sbjct: 63 aagatgtcctccg 75
>RF00241;mir-8;AAQB01006282.1/186530-186609 7260:Drosophila
willistoni
Length = 80
Score = 79.8 bits (40), Expect = 5e-15
Identities = 70/80 (87%), Gaps = 5/80 (6%)
Strand = Plus / Plus
Query: 7 atctgttcacatcttaccgggcagcattaga-----tcctttttataactctaatactgt 61
||||||||||||||||||||||||||||||| | || | ||| ||||||||||||
Sbjct: 1 atctgttcacatcttaccgggcagcattagattttgtactatagatatctctaatactgt 60
Query: 62 caggtaaagatgtcgtccgt 81
||||||||||||||||||||
Sbjct: 61 caggtaaagatgtcgtccgt 80
>RF00241;mir-8;AAAB01008986.1/3020387-3020310 180454:Anopheles
gambiae str. PEST
Length = 78
Score = 75.8 bits (38), Expect = 8e-14
Identities = 67/76 (88%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 8 tctgttcacatcttaccgggcagcattagatccttttt---ataactctaatactgtcag 64
||||||||||||||||||||||||||||||| || | ||| ||||||||||||||
Sbjct: 2 tctgttcacatcttaccgggcagcattagatatgttatcggatatttctaatactgtcag 61
Query: 65 gtaaagatgtcgtccg 80
||||||||||||||||
Sbjct: 62 gtaaagatgtcgtccg 77
>RF00241;mir-8;BAAB01175925.1/123-47 7091:Bombyx mori (domestic
silkworm)
Length = 77
Score = 71.9 bits (36), Expect = 1e-12
Identities = 65/72 (90%), Gaps = 2/72 (2%)
Strand = Plus / Plus
Query: 11 gttcacatcttaccgggcagcattaga-tcctttttataact-ctaatactgtcaggtaa 68
|||| |||||||||||||||||||||| |||| | |||| | |||||||||||||||||
Sbjct: 5 gttcgcatcttaccgggcagcattagagtcctgtctatattttctaatactgtcaggtaa 64
Query: 69 agatgtcgtccg 80
||||||||||||
Sbjct: 65 agatgtcgtccg 76
>RF00241;mir-8;AAZO01008551.1/16828-16905 121224:Pediculus humanus
corporis (human body louse)
Length = 78
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/69 (88%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 9 ctgttcacatcttaccgggcagcattagatccttttta--taactctaatactgtcaggt 66
||||| |||||||||||||||||||||||| ||||| ||| ||||||||||||||||
Sbjct: 3 ctgtttacatcttaccgggcagcattagattgattttaagtaattctaatactgtcaggt 62
Query: 67 aaagatgtc 75
|| ||||||
Sbjct: 63 aatgatgtc 71
>RF00241;mir-8;AADG05004155.1/1299-1373 7460:Apis mellifera (honey
bee)
Length = 75
Score = 63.9 bits (32), Expect = 3e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 7 atctgttcacatcttaccgggcagcattagat 38
||||||||||||||||||||||||||||||||
Sbjct: 1 atctgttcacatcttaccgggcagcattagat 32
>RF00241;mir-8;ABJB010621523.1/197-271 6945:Ixodes scapularis
(black-legged tick)
Length = 75
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 tctaatactgtcaggtaaagatgtc 75
|||||||||||||||||||||||||
Sbjct: 44 tctaatactgtcaggtaaagatgtc 68
