miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36356_dme-mir-11:mirbase
          Length = 75

 Score =  149 bits (75), Expect = 3e-37
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcacttgtcaagaactttctctgtgacccgcgtgtacttaaaagccgcatcacagtctga 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcacttgtcaagaactttctctgtgacccgcgtgtacttaaaagccgcatcacagtctga 60

                         
Query: 61 gttcttgctgagtgc 75
          |||||||||||||||
Sbjct: 61 gttcttgctgagtgc 75




>37130_dse-mir-11:mirbase
          Length = 75

 Score =  149 bits (75), Expect = 3e-37
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcacttgtcaagaactttctctgtgacccgcgtgtacttaaaagccgcatcacagtctga 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcacttgtcaagaactttctctgtgacccgcgtgtacttaaaagccgcatcacagtctga 60

                         
Query: 61 gttcttgctgagtgc 75
          |||||||||||||||
Sbjct: 61 gttcttgctgagtgc 75




>37206_dsi-mir-11:mirbase
          Length = 75

 Score =  149 bits (75), Expect = 3e-37
 Identities = 75/75 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcacttgtcaagaactttctctgtgacccgcgtgtacttaaaagccgcatcacagtctga 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcacttgtcaagaactttctctgtgacccgcgtgtacttaaaagccgcatcacagtctga 60

                         
Query: 61 gttcttgctgagtgc 75
          |||||||||||||||
Sbjct: 61 gttcttgctgagtgc 75




>37499_dya-mir-11:mirbase
          Length = 75

 Score =  135 bits (68), Expect = 5e-33
 Identities = 71/72 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcacttgtcaagaactttctctgtgacccgcgtgtacttaaaagccgcatcacagtctga 60
          |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1  gcacttgtcaagaactttctctgtgacctgcgtgtacttaaaagccgcatcacagtctga 60

                      
Query: 61 gttcttgctgag 72
          ||||||||||||
Sbjct: 61 gttcttgctgag 72




>36170_der-mir-11:mirbase
          Length = 75

 Score =  119 bits (60), Expect = 3e-28
 Identities = 69/72 (95%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcacttgtcaagaactttctctgtgacccgcgtgtacttaaaagccgcatcacagtctga 60
          ||||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 1  gcacttgccaagaactttctctgtgacctgcgtgtactgaaaagccgcatcacagtctga 60

                      
Query: 61 gttcttgctgag 72
          ||||||||||||
Sbjct: 61 gttcttgctgag 72




>37421_dwi-mir-11:mirbase
          Length = 82

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 45 ccgcatcacagtctgagttcttgctgag 72
          ||||||||||||||||||||||||||||
Sbjct: 53 ccgcatcacagtctgagttcttgctgag 80



 Score = 38.2 bits (19), Expect = 8e-04
 Identities = 28/31 (90%)
 Strand = Plus / Plus

                                         
Query: 4  cttgtcaagaactttctctgtgacccgcgtg 34
          |||||||||| || ||||||||||| |||||
Sbjct: 2  cttgtcaagatctctctctgtgacctgcgtg 32




>36258_dgr-mir-11:mirbase
          Length = 79

 Score = 54.0 bits (27), Expect = 1e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 46 cgcatcacagtctgagttcttgctgag 72
          |||||||||||||||||||||||||||
Sbjct: 51 cgcatcacagtctgagttcttgctgag 77




>36841_dpe-mir-11:mirbase
          Length = 71

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 43 agccgcatcacagtctgagttcttgctgag 72
          |||| |||||||||||||||||||||||||
Sbjct: 40 agccacatcacagtctgagttcttgctgag 69




>36917_dps-mir-11:mirbase
          Length = 71

 Score = 52.0 bits (26), Expect = 5e-08
 Identities = 29/30 (96%)
 Strand = Plus / Plus

                                        
Query: 43 agccgcatcacagtctgagttcttgctgag 72
          |||| |||||||||||||||||||||||||
Sbjct: 40 agccacatcacagtctgagttcttgctgag 69




>36092_dan-mir-11:mirbase
          Length = 79

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 48 catcacagtctgagttcttgctgag 72
          |||||||||||||||||||||||||
Sbjct: 52 catcacagtctgagttcttgctgag 76




>36768_dmo-mir-11:mirbase
          Length = 81

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 45 ccgcatcacagtctgagttcttgct 69
          |||||||||||||||||||||||||
Sbjct: 51 ccgcatcacagtctgagttcttgct 75




>37344_dvi-mir-11:mirbase
          Length = 81

 Score = 50.1 bits (25), Expect = 2e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 45 ccgcatcacagtctgagttcttgct 69
          |||||||||||||||||||||||||
Sbjct: 51 ccgcatcacagtctgagttcttgct 75




>35178_aae-mir-11:mirbase
          Length = 114

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 48 catcacagtctgagttcttgct 69
          ||||||||||||||||||||||
Sbjct: 67 catcacagtctgagttcttgct 88




>35279_aga-mir-11:mirbase
          Length = 90

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 48 catcacagtctgagttcttgct 69
          ||||||||||||||||||||||
Sbjct: 63 catcacagtctgagttcttgct 84




>36009_cqu-mir-11:mirbase
          Length = 76

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 48 catcacagtctgagttcttgct 69
          ||||||||||||||||||||||
Sbjct: 52 catcacagtctgagttcttgct 73