miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36172_der-mir-13a:mirbase
Length = 75
Score = 149 bits (75), Expect = 3e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
Query: 61 ttgatgagtttcgtg 75
|||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75
>36360_dme-mir-13a:mirbase
Length = 75
Score = 149 bits (75), Expect = 3e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
Query: 61 ttgatgagtttcgtg 75
|||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75
>37132_dse-mir-13a:mirbase
Length = 75
Score = 149 bits (75), Expect = 3e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
Query: 61 ttgatgagtttcgtg 75
|||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75
>37208_dsi-mir-13a:mirbase
Length = 75
Score = 149 bits (75), Expect = 3e-37
Identities = 75/75 (100%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
Query: 61 ttgatgagtttcgtg 75
|||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75
>37500_dya-mir-13a:mirbase
Length = 75
Score = 141 bits (71), Expect = 8e-35
Identities = 74/75 (98%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 1 tacgtaactcctcaaagggttgtgaaatgtcgcctattatctactcatatcacagccatt 60
Query: 61 ttgatgagtttcgtg 75
|||||||||||||||
Sbjct: 61 ttgatgagtttcgtg 75
>36094_dan-mir-13a:mirbase
Length = 74
Score = 109 bits (55), Expect = 3e-25
Identities = 71/75 (94%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
||||||||||||||||||| |||||||||| | | |||||||||||||||||||||||||
Sbjct: 1 tacgtaactcctcaaagggctgtgaaatgttgcc-attatctactcatatcacagccatt 59
Query: 61 ttgatgagtttcgtg 75
|||||||||||||||
Sbjct: 60 ttgatgagtttcgtg 74
>36260_dgr-mir-13a:mirbase
Length = 74
Score = 81.8 bits (41), Expect = 6e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 cgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatttt 62
|||||||| |||| |||||||||||||| | ||||||| | ||||||||||||||||||
Sbjct: 3 cgtaactcttcaaggggttgtgaaatgtggg-tattatcaagtcatatcacagccatttt 61
Query: 63 gatgagtttcgtg 75
|||||||||||||
Sbjct: 62 gatgagtttcgtg 74
>36770_dmo-mir-13a:mirbase
Length = 74
Score = 81.8 bits (41), Expect = 6e-17
Identities = 66/73 (90%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 cgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatttt 62
|||||||| |||| |||||||||||||| | | |||||| | ||||||||||||||||||
Sbjct: 3 cgtaactcttcaaggggttgtgaaatgtagcc-attatcaagtcatatcacagccatttt 61
Query: 63 gatgagtttcgtg 75
|||||||||||||
Sbjct: 62 gatgagtttcgtg 74
>37346_dvi-mir-13a:mirbase
Length = 74
Score = 73.8 bits (37), Expect = 1e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 3 cgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatttt 62
|||||||| |||| |||||||||||||| | | ||||| | ||||||||||||||||||
Sbjct: 3 cgtaactcttcaaggggttgtgaaatgttgccg-ttatcaagtcatatcacagccatttt 61
Query: 63 gatgagtttcgtg 75
|||||||||||||
Sbjct: 62 gatgagtttcgtg 74
>36843_dpe-mir-13a:mirbase
Length = 74
Score = 69.9 bits (35), Expect = 2e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
|||||||| | ||||| ||||||||||||| | | ||||| | ||||||||||||||||
Sbjct: 1 tacgtaacccatcaaacggttgtgaaatgttgcat-ttatcaaatcatatcacagccatt 59
Query: 61 ttgatgagtttcgtg 75
|||||||||||||||
Sbjct: 60 ttgatgagtttcgtg 74
>36919_dps-mir-13a:mirbase
Length = 74
Score = 69.9 bits (35), Expect = 2e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 tacgtaactcctcaaagggttgtgaaatgtcgactattatctactcatatcacagccatt 60
|||||||| | ||||| ||||||||||||| | | ||||| | ||||||||||||||||
Sbjct: 1 tacgtaacccatcaaacggttgtgaaatgttgcat-ttatcaaatcatatcacagccatt 59
Query: 61 ttgatgagtttcgtg 75
|||||||||||||||
Sbjct: 60 ttgatgagtttcgtg 74
>37423_dwi-mir-13a:mirbase
Length = 78
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 43 actcatatcacagccattttgatgagtttcgtg 75
|||||||||||||||||||||||||||||||||
Sbjct: 46 actcatatcacagccattttgatgagtttcgtg 78
>35352_ame-mir-13a:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgag 68
||||||||||||||||||||||||
Sbjct: 61 tcatatcacagccattttgatgag 84
>36845_dpe-mir-13b-2:mirbase
Length = 66
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 44 ctcatatcacagccattttgatgagttt 71
||||||||||||||||||||| ||||||
Sbjct: 39 ctcatatcacagccattttgacgagttt 66
>36921_dps-mir-13b-2:mirbase
Length = 69
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 44 ctcatatcacagccattttgatgagttt 71
||||||||||||||||||||| ||||||
Sbjct: 41 ctcatatcacagccattttgacgagttt 68
>37424_dwi-mir-13b-1:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 40 tctactcatatcacagccattttgatgagttt 71
|||| |||||||||||||||||||| ||||||
Sbjct: 38 tctattcatatcacagccattttgacgagttt 69
>35281_aga-mir-13b:mirbase
Length = 94
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 53 tcatatcacagccattttgacgagttt 79
>36011_cqu-mir-13:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 52 tcatatcacagccattttgacgagttt 78
>36095_dan-mir-13b-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36096_dan-mir-13b-2:mirbase
Length = 66
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 39 tcatatcacagccattttgacgagttt 65
>36173_der-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36174_der-mir-13b-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36261_dgr-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36262_dgr-mir-13b-2:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 46 tcatatcacagccattttgacgagttt 72
>36361_dme-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36362_dme-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36363_dme-mir-13b-2:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69
>36364_dme-mir-13b-2:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 43 tcatatcacagccattttgacgagttt 69
>36771_dmo-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>36772_dmo-mir-13b-2:mirbase
Length = 67
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36844_dpe-mir-13b-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>36920_dps-mir-13b-1:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>37133_dse-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>37134_dse-mir-13b-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>37209_dsi-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>37210_dsi-mir-13b-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>37347_dvi-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>37348_dvi-mir-13b-2:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 46 tcatatcacagccattttgacgagttt 72
>37501_dya-mir-13b-1:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgacgagttt 66
>37502_dya-mir-13b-2:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagttt 71
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgacgagttt 67
>37572_ngi-mir-13a:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 catatcacagccattttgatgag 68
|||||||||||||||||||||||
Sbjct: 49 catatcacagccattttgatgag 71
>37606_nlo-mir-13a:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 catatcacagccattttgatgag 68
|||||||||||||||||||||||
Sbjct: 49 catatcacagccattttgatgag 71
>37639_nvi-mir-13a:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 46 catatcacagccattttgatgag 68
|||||||||||||||||||||||
Sbjct: 65 catatcacagccattttgatgag 87
>35180_aae-mir-13:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagtt 70
|||||||||||||||||||| |||||
Sbjct: 51 tcatatcacagccattttgacgagtt 76
>37425_dwi-mir-13b-2:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgagtt 70
|||||||||||||||||||| |||||
Sbjct: 41 tcatatcacagccattttgacgagtt 66
>35051_api-mir-13a:mirbase
Length = 61
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 tcatatcacagccattttgatgag 68
|||||||||||||| |||||||||
Sbjct: 37 tcatatcacagccactttgatgag 60
>37713_tca-mir-13b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 48 tatcacagccattttgatgagttt 71
||||||||||||||||| ||||||
Sbjct: 46 tatcacagccattttgacgagttt 69
>37714_tca-mir-13b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 48 tatcacagccattttgatgagttt 71
||||||||||||||||| ||||||
Sbjct: 46 tatcacagccattttgacgagttt 69
>35527_bmo-mir-13b:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctcatatcacagccatttt 62
|||||||||||||||||||
Sbjct: 44 ctcatatcacagccatttt 62
