miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;AAKO01003387.1/9775-9842 7238:Drosophila sechellia
Length = 68
Score = 131 bits (66), Expect = 1e-30
Identities = 66/66 (100%)
Strand = Plus / Plus
Query: 5 aacgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacg 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aacgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacg 61
Query: 65 agtttg 70
||||||
Sbjct: 62 agtttg 67
>RF00047;mir-2;AAIZ01004769.1/8926-8993 7234:Drosophila persimilis
Length = 68
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 6 acgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacga 65
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct: 3 acgcgtcaaaatgactgtgagctatgtgtttttgatctcatatcacagccattttgacga 62
Query: 66 gtttg 70
|||||
Sbjct: 63 gtttg 67
>RF00047;mir-2;AAPP01016552.1/52617-52684 7217:Drosophila
ananassae
Length = 68
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 7 cgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacgag 66
|||||| |||||||||||| |||| | |||||| ||||||||||||||||||||||||
Sbjct: 4 cgcgtcgaaatgactgtgacttatgcgtatttgatgtcatatcacagccattttgacgag 63
Query: 67 tttg 70
||||
Sbjct: 64 tttg 67
>RF00047;mir-2;AANI01016575.1/52926-52998 7244:Drosophila virilis
Length = 73
Score = 71.9 bits (36), Expect = 1e-12
Identities = 62/69 (89%), Gaps = 5/69 (7%)
Strand = Plus / Plus
Query: 7 cgcgtcaaaatgactgtgagctatgtgg----atttgac-ttcatatcacagccattttg 61
|||||||||||||||||||||||||| | ||||| | ||||||||||||||||||||
Sbjct: 4 cgcgtcaaaatgactgtgagctatgttgttgcatttgccattcatatcacagccattttg 63
Query: 62 acgagtttg 70
|||||||||
Sbjct: 64 acgagtttg 72
>RF00047;mir-2;AAPU01009688.1/35644-35576 7230:Drosophila
mojavensis
Length = 69
Score = 65.9 bits (33), Expect = 6e-11
Identities = 58/65 (89%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 7 cgcgtcaaaatgactgtgagctatgtggatttgact-tcatatcacagccattttgacga 65
||||||||| |||||||||||||||| || || | |||||||||||||||||||||||
Sbjct: 4 cgcgtcaaattgactgtgagctatgtttatgagattatcatatcacagccattttgacga 63
Query: 66 gtttg 70
|||||
Sbjct: 64 gtttg 68
>RF00047;mir-2;AAWU01020422.1/10782-10706 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 77
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 42 ttcatatcacagccattttgacgagtttg 70
|||||||||||||||||||||||||||||
Sbjct: 48 ttcatatcacagccattttgacgagtttg 76
>RF00047;mir-2;AAAB01008807.1/11606679-11606749 180454:Anopheles
gambiae str. PEST
Length = 71
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 42 ttcatatcacagccattttgacgagtttg 70
|||||||||||||||||||||||||||||
Sbjct: 42 ttcatatcacagccattttgacgagtttg 70
>RF00047;mir-2;AAQB01008610.1/296699-296630 7260:Drosophila
willistoni
Length = 70
Score = 58.0 bits (29), Expect = 1e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 42 ttcatatcacagccattttgacgagtttg 70
|||||||||||||||||||||||||||||
Sbjct: 41 ttcatatcacagccattttgacgagtttg 69
>RF00047;mir-2;AAIZ01000548.1/11193-11126 7234:Drosophila
persimilis
Length = 68
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 43 tcatatcacagccattttgacgagtttg 70
||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67
>RF00047;mir-2;AASW01010650.1/86-152 7240:Drosophila simulans
Length = 67
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 43 tcatatcacagccattttgacgagtttg 70
||||||||||||||||||||||||||||
Sbjct: 39 tcatatcacagccattttgacgagtttg 66
>RF00047;mir-2;AANI01017189.1/98316-98382 7244:Drosophila virilis
Length = 67
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 43 tcatatcacagccattttgacgagtttg 70
||||||||||||||||||||||||||||
Sbjct: 39 tcatatcacagccattttgacgagtttg 66
>RF00047;mir-2;AAGE02012793.1/17697-17627 7159:Aedes aegypti
(yellow fever mosquito)
Length = 71
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 ttcatatcacagccattttgacgagtt 68
|||||||||||||||||||||||||||
Sbjct: 42 ttcatatcacagccattttgacgagtt 68
>RF00047;mir-2;AAQB01006881.1/26688-26760 7260:Drosophila
willistoni
Length = 73
Score = 54.0 bits (27), Expect = 2e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 42 ttcatatcacagccattttgacgagtt 68
|||||||||||||||||||||||||||
Sbjct: 44 ttcatatcacagccattttgacgagtt 70
Score = 52.0 bits (26), Expect = 9e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 cgcgtcaaaatgactgtgagctatgt 32
||||||||||||||||||||||||||
Sbjct: 4 cgcgtcaaaatgactgtgagctatgt 29
>RF00047;mir-2;AAJJ01001714.1/2527-2594 7070:Tribolium castaneum
(red flour beetle)
Length = 68
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 46 tatcacagccattttgacgagtttg 70
|||||||||||||||||||||||||
Sbjct: 43 tatcacagccattttgacgagtttg 67
>RF00047;mir-2;AAIZ01000548.1/11342-11275 7234:Drosophila
persimilis
Length = 68
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 43 tcatatcacagccattttgacgagttt 69
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgatgagttt 66
>RF00047;mir-2;AE014297.2/11243334-11243266 7227:Drosophila
melanogaster (fruit fly)
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 43 tcatatcacagccattttgacgagttt 69
|||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgatgagttt 67
>RF00047;mir-2;AAPU01011022.1/363976-364043 7230:Drosophila
mojavensis
Length = 68
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 43 tcatatcacagccattttgacgagttt 69
|||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgatgagttt 66
