miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;AAKO01003387.1/9775-9842 7238:Drosophila sechellia
          Length = 68

 Score =  131 bits (66), Expect = 1e-30
 Identities = 66/66 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  aacgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacg 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  aacgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacg 61

                
Query: 65 agtttg 70
          ||||||
Sbjct: 62 agtttg 67




>RF00047;mir-2;AAIZ01004769.1/8926-8993 7234:Drosophila persimilis
          Length = 68

 Score = 97.6 bits (49), Expect = 2e-20
 Identities = 61/65 (93%)
 Strand = Plus / Plus

                                                                      
Query: 6  acgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacga 65
          ||||||||||||||||||||||||||||  |||||  |||||||||||||||||||||||
Sbjct: 3  acgcgtcaaaatgactgtgagctatgtgtttttgatctcatatcacagccattttgacga 62

               
Query: 66 gtttg 70
          |||||
Sbjct: 63 gtttg 67




>RF00047;mir-2;AAPP01016552.1/52617-52684 7217:Drosophila
          ananassae
          Length = 68

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 57/64 (89%)
 Strand = Plus / Plus

                                                                      
Query: 7  cgcgtcaaaatgactgtgagctatgtggatttgacttcatatcacagccattttgacgag 66
          |||||| ||||||||||||  |||| | ||||||  ||||||||||||||||||||||||
Sbjct: 4  cgcgtcgaaatgactgtgacttatgcgtatttgatgtcatatcacagccattttgacgag 63

              
Query: 67 tttg 70
          ||||
Sbjct: 64 tttg 67




>RF00047;mir-2;AANI01016575.1/52926-52998 7244:Drosophila virilis
          Length = 73

 Score = 71.9 bits (36), Expect = 1e-12
 Identities = 62/69 (89%), Gaps = 5/69 (7%)
 Strand = Plus / Plus

                                                                      
Query: 7  cgcgtcaaaatgactgtgagctatgtgg----atttgac-ttcatatcacagccattttg 61
          |||||||||||||||||||||||||| |    ||||| | ||||||||||||||||||||
Sbjct: 4  cgcgtcaaaatgactgtgagctatgttgttgcatttgccattcatatcacagccattttg 63

                   
Query: 62 acgagtttg 70
          |||||||||
Sbjct: 64 acgagtttg 72




>RF00047;mir-2;AAPU01009688.1/35644-35576 7230:Drosophila
          mojavensis
          Length = 69

 Score = 65.9 bits (33), Expect = 6e-11
 Identities = 58/65 (89%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  cgcgtcaaaatgactgtgagctatgtggatttgact-tcatatcacagccattttgacga 65
          ||||||||| ||||||||||||||||  ||  || | |||||||||||||||||||||||
Sbjct: 4  cgcgtcaaattgactgtgagctatgtttatgagattatcatatcacagccattttgacga 63

               
Query: 66 gtttg 70
          |||||
Sbjct: 64 gtttg 68




>RF00047;mir-2;AAWU01020422.1/10782-10706 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 77

 Score = 58.0 bits (29), Expect = 1e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 42 ttcatatcacagccattttgacgagtttg 70
          |||||||||||||||||||||||||||||
Sbjct: 48 ttcatatcacagccattttgacgagtttg 76




>RF00047;mir-2;AAAB01008807.1/11606679-11606749 180454:Anopheles
          gambiae str. PEST
          Length = 71

 Score = 58.0 bits (29), Expect = 1e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 42 ttcatatcacagccattttgacgagtttg 70
          |||||||||||||||||||||||||||||
Sbjct: 42 ttcatatcacagccattttgacgagtttg 70




>RF00047;mir-2;AAQB01008610.1/296699-296630 7260:Drosophila
          willistoni
          Length = 70

 Score = 58.0 bits (29), Expect = 1e-08
 Identities = 29/29 (100%)
 Strand = Plus / Plus

                                       
Query: 42 ttcatatcacagccattttgacgagtttg 70
          |||||||||||||||||||||||||||||
Sbjct: 41 ttcatatcacagccattttgacgagtttg 69




>RF00047;mir-2;AAIZ01000548.1/11193-11126 7234:Drosophila
          persimilis
          Length = 68

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 43 tcatatcacagccattttgacgagtttg 70
          ||||||||||||||||||||||||||||
Sbjct: 40 tcatatcacagccattttgacgagtttg 67




>RF00047;mir-2;AASW01010650.1/86-152 7240:Drosophila simulans
          Length = 67

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 43 tcatatcacagccattttgacgagtttg 70
          ||||||||||||||||||||||||||||
Sbjct: 39 tcatatcacagccattttgacgagtttg 66




>RF00047;mir-2;AANI01017189.1/98316-98382 7244:Drosophila virilis
          Length = 67

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 43 tcatatcacagccattttgacgagtttg 70
          ||||||||||||||||||||||||||||
Sbjct: 39 tcatatcacagccattttgacgagtttg 66




>RF00047;mir-2;AAGE02012793.1/17697-17627 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 71

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 42 ttcatatcacagccattttgacgagtt 68
          |||||||||||||||||||||||||||
Sbjct: 42 ttcatatcacagccattttgacgagtt 68




>RF00047;mir-2;AAQB01006881.1/26688-26760 7260:Drosophila
          willistoni
          Length = 73

 Score = 54.0 bits (27), Expect = 2e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 42 ttcatatcacagccattttgacgagtt 68
          |||||||||||||||||||||||||||
Sbjct: 44 ttcatatcacagccattttgacgagtt 70



 Score = 52.0 bits (26), Expect = 9e-07
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 7  cgcgtcaaaatgactgtgagctatgt 32
          ||||||||||||||||||||||||||
Sbjct: 4  cgcgtcaaaatgactgtgagctatgt 29




>RF00047;mir-2;AAJJ01001714.1/2527-2594 7070:Tribolium castaneum
          (red flour beetle)
          Length = 68

 Score = 50.1 bits (25), Expect = 4e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 46 tatcacagccattttgacgagtttg 70
          |||||||||||||||||||||||||
Sbjct: 43 tatcacagccattttgacgagtttg 67




>RF00047;mir-2;AAIZ01000548.1/11342-11275 7234:Drosophila
          persimilis
          Length = 68

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 43 tcatatcacagccattttgacgagttt 69
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgatgagttt 66




>RF00047;mir-2;AE014297.2/11243334-11243266 7227:Drosophila
          melanogaster (fruit fly)
          Length = 69

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 43 tcatatcacagccattttgacgagttt 69
          |||||||||||||||||||| ||||||
Sbjct: 41 tcatatcacagccattttgatgagttt 67




>RF00047;mir-2;AAPU01011022.1/363976-364043 7230:Drosophila
          mojavensis
          Length = 68

 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 43 tcatatcacagccattttgacgagttt 69
          |||||||||||||||||||| ||||||
Sbjct: 40 tcatatcacagccattttgatgagttt 66