miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00838;mir-252;AABU01002774.1/5715658-5715545 7227:Drosophila
melanogaster (fruit fly)
Length = 114
Score = 184 bits (93), Expect = 1e-46
Identities = 93/93 (100%)
Strand = Plus / Plus
Query: 1 accaagttcgctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 accaagttcgctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacct 70
Query: 61 cctgctgcccaagtgcttattaaagcggcgagt 93
|||||||||||||||||||||||||||||||||
Sbjct: 71 cctgctgcccaagtgcttattaaagcggcgagt 103
>RF00838;mir-252;AAPP01019511.1/70614-70503 7217:Drosophila
ananassae
Length = 112
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 8 tcgctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17 tcgctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctg 76
Query: 68 cccaagtgcttattaaagcggcgagt 93
||||||||||||||||||||||||||
Sbjct: 77 cccaagtgcttattaaagcggcgagt 102
>RF00838;mir-252;AAFS01000005.1/103510-103621 46245:Drosophila
pseudoobscura pseudoobscura
Length = 112
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 10 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 69
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 79
Query: 70 caagtgcttattaaagcggcg 90
|||||||||||||||||||||
Sbjct: 80 caagtgcttattaaagcggcg 100
>RF00838;mir-252;AANI01014608.1/9402-9515 7244:Drosophila virilis
Length = 114
Score = 139 bits (70), Expect = 7e-33
Identities = 76/78 (97%)
Strand = Plus / Plus
Query: 10 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 69
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 20 gctttcctaagtactagtgccgcaggagttaggtttgtgtccgcaatgcctcctgctgcc 79
Query: 70 caagtgcttattaaagcg 87
||||||||||||||||||
Sbjct: 80 caagtgcttattaaagcg 97
>RF00838;mir-252;AAQB01009407.1/423501-423388 7260:Drosophila
willistoni
Length = 114
Score = 131 bits (66), Expect = 2e-30
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 10 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 69
||||| |||||||||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct: 20 gctttactaagtactagtgccgcaggagtttggttcgtgtccgtaatacctcctgctgcc 79
Query: 70 caagtgcttattaaagcg 87
||||||||||||||||||
Sbjct: 80 caagtgcttattaaagcg 97
>RF00838;mir-252;AAPT01019325.1/16150-16037 7222:Drosophila
grimshawi
Length = 114
Score = 131 bits (66), Expect = 2e-30
Identities = 72/74 (97%)
Strand = Plus / Plus
Query: 10 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 69
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 20 gctttcctaagtactagtgccgcaggagttaggtttgtgtccgcaatgcctcctgctgcc 79
Query: 70 caagtgcttattaa 83
||||||||||||||
Sbjct: 80 caagtgcttattaa 93
>RF00838;mir-252;AAPU01011022.1/144995-144882 7230:Drosophila
mojavensis
Length = 114
Score = 127 bits (64), Expect = 3e-29
Identities = 79/84 (94%)
Strand = Plus / Plus
Query: 10 gctttcctaagtactagtgccgcaggagttaggttcgtgtccgcaatacctcctgctgcc 69
||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||
Sbjct: 20 gctttcctaagtactagtgccgcaggagttagggttgtgtccgcaatgcctcctgctgcc 79
Query: 70 caagtgcttattaaagcggcgagt 93
||||||||||| |||||| |||||
Sbjct: 80 caagtgcttatcaaagcgacgagt 103
>RF00838;mir-252;AAZX01009285.1/3883-4013 7425:Nasonia vitripennis
(jewel wasp)
Length = 131
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 ttcctaagtactagtgccgcaggagt 38
||||||||||||||||||||||||||
Sbjct: 25 ttcctaagtactagtgccgcaggagt 50
>RF00838;mir-252;BABH01035687.1/2460-2355 7091:Bombyx mori
(domestic silkworm)
Length = 106
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 ttcctaagtactagtgccgcaggag 37
|||||||||||||||||||||||||
Sbjct: 23 ttcctaagtactagtgccgcaggag 47
>RF00838;mir-252;AAZO01005296.1/52222-52118 121224:Pediculus
humanus corporis (human body louse)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ctaagtactagtgccgcaggagtt 39
||||||||||||||||||||||||
Sbjct: 26 ctaagtactagtgccgcaggagtt 49
>RF00838;mir-252;AAGE02003685.1/79138-79037 7159:Aedes aegypti
(yellow fever mosquito)
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 ctttcctaagtactagtgccgcaggag 37
|||| ||||||||||||||||||||||
Sbjct: 21 ctttactaagtactagtgccgcaggag 47
>RF00838;mir-252;ABKP02026277.1/40376-40477 377271:Anopheles
gambiae M
Length = 102
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 ctttcctaagtactagtgccgcaggag 37
|||| ||||||||||||||||||||||
Sbjct: 21 ctttactaagtactagtgccgcaggag 47
>RF00838;mir-252;AAJJ01000151.1/90694-90592 7070:Tribolium
castaneum (red flour beetle)
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 ctaagtactagtgccgcaggagt 38
|||||||||||||||||||||||
Sbjct: 26 ctaagtactagtgccgcaggagt 48
>RF00838;mir-252;ABLF01035568.1/15094-15205 7029:Acyrthosiphon
pisum (pea aphid)
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 ttcctaagtactagtgccgcaggagt 38
|||||||||||||||||||| |||||
Sbjct: 23 ttcctaagtactagtgccgcgggagt 48
>RF00838;mir-252;AADG05011415.1/92-6 7460:Apis mellifera (honey
bee)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 taagtactagtgccgcaggagt 38
||||||||||||||||||||||
Sbjct: 9 taagtactagtgccgcaggagt 30
