miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36410_dme-mir-274:mirbase
Length = 100
Score = 198 bits (100), Expect = 5e-52
Identities = 100/100 (100%)
Strand = Plus / Plus
Query: 1 tcctgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggccgccagga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcctgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggccgccagga 60
Query: 61 ttactcgtttttgcgatcacaaattatgaaattgcagcaa 100
||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttactcgtttttgcgatcacaaattatgaaattgcagcaa 100
>36193_der-mir-274:mirbase
Length = 97
Score = 184 bits (93), Expect = 8e-48
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 4 tgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggccgccaggatta 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggccgccaggatta 60
Query: 64 ctcgtttttgcgatcacaaattatgaaattgcagcaa 100
||||||||||||||||||||| |||||||||||||||
Sbjct: 61 ctcgtttttgcgatcacaaatcatgaaattgcagcaa 97
>37522_dya-mir-274:mirbase
Length = 97
Score = 176 bits (89), Expect = 2e-45
Identities = 95/97 (97%)
Strand = Plus / Plus
Query: 4 tgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggccgccaggatta 63
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1 tgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggtcgccaggatta 60
Query: 64 ctcgtttttgcgatcacaaattatgaaattgcagcaa 100
||||||||||||||||||||| |||||||||||||||
Sbjct: 61 ctcgtttttgcgatcacaaatcatgaaattgcagcaa 97
>37153_dse-mir-274:mirbase
Length = 97
Score = 161 bits (81), Expect = 1e-40
Identities = 93/97 (95%)
Strand = Plus / Plus
Query: 4 tgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttggccgccaggatta 63
||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 1 tgtgttgcagtttcgttttgtgaccgacactaacgggtaattgtttgatcaccaggatta 60
Query: 64 ctcgtttttgcgatcacaaattatgaaattgcagcaa 100
||||||||||||||||||||| |||||||||||||||
Sbjct: 61 ctcgtttttgcgatcacaaatcatgaaattgcagcaa 97
>36115_dan-mir-274:mirbase
Length = 96
Score = 95.6 bits (48), Expect = 6e-21
Identities = 85/96 (88%), Gaps = 1/96 (1%)
Strand = Plus / Plus
Query: 6 tgttgcagtttcgttttgtgaccgacactaacgggtaattgtttgg-ccgccaggattac 64
||||||||||||||||||||||||||||||||||||| || || | |||||||||
Sbjct: 1 tgttgcagtttcgttttgtgaccgacactaacgggtattttacaggacatacaggattac 60
Query: 65 tcgtttttgcgatcacaaattatgaaattgcagcaa 100
|||||||||||||||||||| ||||||||||||||
Sbjct: 61 tcgtttttgcgatcacaaatcctgaaattgcagcaa 96
>36867_dpe-mir-274:mirbase
Length = 94
Score = 87.7 bits (44), Expect = 1e-18
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 9 tgcagtttcgttttgtgaccgacactaacgggtaattgtttggccgccaggattactcgt 68
||||||||| ||||||||||||||||||||||||| || |||||| ||||| |||||||
Sbjct: 6 tgcagtttcattttgtgaccgacactaacgggtaa-tggctggccg-caggactactcgt 63
Query: 69 ttttgcgatcacaaattatgaaattgcagcaa 100
|||||||||||| ||| ||||||||||||||
Sbjct: 64 ttttgcgatcac-aatactgaaattgcagcaa 94
>36946_dps-mir-274:mirbase
Length = 97
Score = 87.7 bits (44), Expect = 1e-18
Identities = 83/92 (90%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 9 tgcagtttcgttttgtgaccgacactaacgggtaattgtttggccgccaggattactcgt 68
||||||||| ||||||||||||||||||||||||| || |||||| ||||| |||||||
Sbjct: 9 tgcagtttcattttgtgaccgacactaacgggtaa-tggctggccg-caggactactcgt 66
Query: 69 ttttgcgatcacaaattatgaaattgcagcaa 100
|||||||||||| ||| ||||||||||||||
Sbjct: 67 ttttgcgatcac-aatactgaaattgcagcaa 97
>37367_dvi-mir-274:mirbase
Length = 105
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 6 tgttgcagtttcgttttgtgaccgacactaacgggta 42
||||||||||||| |||||||||||||||||||||||
Sbjct: 4 tgttgcagtttcggtttgtgaccgacactaacgggta 40
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 61 ttactcgtttttgcgatcacaaattatgaaattgca 96
||||||||||||||||||||||||| ||||||||||
Sbjct: 66 ttactcgtttttgcgatcacaaattctgaaattgca 101
>37446_dwi-mir-274:mirbase
Length = 105
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 7 gttgcagtttcgttttgtgaccgacactaacgggta 42
||||||||||| ||||||||||||||||||||||||
Sbjct: 1 gttgcagtttcattttgtgaccgacactaacgggta 36
Score = 63.9 bits (32), Expect = 2e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 61 ttactcgtttttgcgatcacaaattatgaaattgca 96
||||||||||||||||||||||||| ||||||||||
Sbjct: 70 ttactcgtttttgcgatcacaaattctgaaattgca 105
>36790_dmo-mir-274:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 8e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 62 tactcgtttttgcgatcacaaattatgaaa 91
|||||||||||||||||||||||| |||||
Sbjct: 58 tactcgtttttgcgatcacaaattctgaaa 87
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 tttcgttttgtgaccgacactaacgggta 42
||||| |||||||||||||||||||||||
Sbjct: 1 tttcggtttgtgaccgacactaacgggta 29
>36282_dgr-mir-274:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 ttactcgtttttgcgatcacaaatt 85
|||||||||||||||||||||||||
Sbjct: 57 ttactcgtttttgcgatcacaaatt 81
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 tttgtgaccgacactaacgggta 42
|||||||||||||||||||||||
Sbjct: 5 tttgtgaccgacactaacgggta 27
