miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36412_dme-mir-275:mirbase
          Length = 98

 Score =  194 bits (98), Expect = 8e-51
 Identities = 98/98 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tgtaaagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtc 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tgtaaagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtc 60

                                                
Query: 61 aggtacctgaagtagcgcgcgtggtggcagacatatat 98
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggtacctgaagtagcgcgcgtggtggcagacatatat 98




>37232_dsi-mir-275:mirbase
          Length = 90

 Score =  178 bits (90), Expect = 5e-46
 Identities = 90/90 (100%)
 Strand = Plus / Plus

                                                                      
Query: 5  aagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggt 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggt 60

                                        
Query: 65 acctgaagtagcgcgcgtggtggcagacat 94
          ||||||||||||||||||||||||||||||
Sbjct: 61 acctgaagtagcgcgcgtggtggcagacat 90




>36194_der-mir-275:mirbase
          Length = 90

 Score =  170 bits (86), Expect = 1e-43
 Identities = 89/90 (98%)
 Strand = Plus / Plus

                                                                      
Query: 5  aagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggt 64
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggt 60

                                        
Query: 65 acctgaagtagcgcgcgtggtggcagacat 94
          |||||||||||||||||||||| |||||||
Sbjct: 61 acctgaagtagcgcgcgtggtgccagacat 90




>37154_dse-mir-275:mirbase
          Length = 90

 Score =  170 bits (86), Expect = 1e-43
 Identities = 89/90 (98%)
 Strand = Plus / Plus

                                                                      
Query: 5  aagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggt 64
          |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1  aagtctcctaccttgcgcgctaatcagtgaccggggcttgttttttatatacagtcaggt 60

                                        
Query: 65 acctgaagtagcgcgcgtggtggcagacat 94
          ||||||||||||||||||||||||||||||
Sbjct: 61 acctgaagtagcgcgcgtggtggcagacat 90




>37523_dya-mir-275:mirbase
          Length = 90

 Score =  168 bits (85), Expect = 5e-43
 Identities = 88/89 (98%)
 Strand = Plus / Plus

                                                                      
Query: 6  agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 65
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 61

                                       
Query: 66 cctgaagtagcgcgcgtggtggcagacat 94
          ||||||||||||||||||||| |||||||
Sbjct: 62 cctgaagtagcgcgcgtggtgccagacat 90




>36116_dan-mir-275:mirbase
          Length = 87

 Score =  131 bits (66), Expect = 1e-31
 Identities = 84/89 (94%), Gaps = 2/89 (2%)
 Strand = Plus / Plus

                                                                      
Query: 6  agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 65
          ||||||||||||||||||||||||||||||||||||||||||||   |  ||||||||||
Sbjct: 1  agtctcctaccttgcgcgctaatcagtgaccggggctggtttttgcaa--cagtcaggta 58

                                       
Query: 66 cctgaagtagcgcgcgtggtggcagacat 94
          |||||||||||||||||||||||||||||
Sbjct: 59 cctgaagtagcgcgcgtggtggcagacat 87




>36947_dps-mir-275:mirbase
          Length = 90

 Score =  117 bits (59), Expect = 2e-27
 Identities = 77/83 (92%)
 Strand = Plus / Plus

                                                                      
Query: 4  aaagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcagg 63
          ||||||||||||| |||||||||||||| ||||||||||||||||||   | ||||||||
Sbjct: 1  aaagtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcagg 60

                                 
Query: 64 tacctgaagtagcgcgcgtggtg 86
          |||||||||||||||||||||||
Sbjct: 61 tacctgaagtagcgcgcgtggtg 83




>36868_dpe-mir-275:mirbase
          Length = 89

 Score =  115 bits (58), Expect = 6e-27
 Identities = 76/82 (92%)
 Strand = Plus / Plus

                                                                      
Query: 5  aagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggt 64
          |||||||||||| |||||||||||||| ||||||||||||||||||   | |||||||||
Sbjct: 1  aagtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcaggt 60

                                
Query: 65 acctgaagtagcgcgcgtggtg 86
          ||||||||||||||||||||||
Sbjct: 61 acctgaagtagcgcgcgtggtg 82




>37368_dvi-mir-275:mirbase
          Length = 92

 Score = 97.6 bits (49), Expect = 1e-21
 Identities = 72/79 (91%), Gaps = 3/79 (3%)
 Strand = Plus / Plus

                                                                      
Query: 13 taccttgcgcgctaatcagtgaccggggctggttttttatat---acagtcaggtacctg 69
          |||| |||||||||||||||||||||||||||||||   |||   |||||||||||||||
Sbjct: 7  taccgtgcgcgctaatcagtgaccggggctggttttggttatcccacagtcaggtacctg 66

                             
Query: 70 aagtagcgcgcgtggtggc 88
          |||||||||||||||||||
Sbjct: 67 aagtagcgcgcgtggtggc 85




>36791_dmo-mir-275:mirbase
          Length = 92

 Score = 95.6 bits (48), Expect = 6e-21
 Identities = 73/79 (92%), Gaps = 3/79 (3%)
 Strand = Plus / Plus

                                                                      
Query: 13 taccttgcgcgctaatcagtgaccggggctggtttt--ttatat-acagtcaggtacctg 69
          |||| ||||||||||||||||||||||||||||||   |||| | |||||||||||||||
Sbjct: 7  taccgtgcgcgctaatcagtgaccggggctggtttcgattatctcacagtcaggtacctg 66

                             
Query: 70 aagtagcgcgcgtggtggc 88
          |||||||||||||||||||
Sbjct: 67 aagtagcgcgcgtggtggc 85




>36283_dgr-mir-275:mirbase
          Length = 92

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 67/73 (91%), Gaps = 3/73 (4%)
 Strand = Plus / Plus

                                                                      
Query: 19 gcgcgctaatcagtgaccggggctggttttttatat---acagtcaggtacctgaagtag 75
          ||||||||||||||||||||||||||||||   |||   |||||||||||||||||||||
Sbjct: 13 gcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacctgaagtag 72

                       
Query: 76 cgcgcgtggtggc 88
          |||||||||||||
Sbjct: 73 cgcgcgtggtggc 85




>37447_dwi-mir-275:mirbase
          Length = 93

 Score = 85.7 bits (43), Expect = 5e-18
 Identities = 75/84 (89%), Gaps = 5/84 (5%)
 Strand = Plus / Plus

                                                                      
Query: 7  gtctcctaccttgcgcgctaatcagtgaccggggctggtt--ttttat---atacagtca 61
          ||||| |||||||||||||||||||||||| ||||||  |  ||||||   |||||||||
Sbjct: 1  gtctcttaccttgcgcgctaatcagtgaccagggctgagtaattttattcaatacagtca 60

                                  
Query: 62 ggtacctgaagtagcgcgcgtggt 85
          ||||||||||||||||||||||||
Sbjct: 61 ggtacctgaagtagcgcgcgtggt 84




>35204_aae-mir-275:mirbase
          Length = 83

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 56 cagtcaggtacctgaagtagcgcgcgtg 83
          ||||||||||||||||||||||||||||
Sbjct: 53 cagtcaggtacctgaagtagcgcgcgtg 80




>36031_cqu-mir-275:mirbase
          Length = 101

 Score = 56.0 bits (28), Expect = 5e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 56 cagtcaggtacctgaagtagcgcgcgtg 83
          ||||||||||||||||||||||||||||
Sbjct: 59 cagtcaggtacctgaagtagcgcgcgtg 86




>35299_aga-mir-275:mirbase
          Length = 95

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 56 cagtcaggtacctgaagtagcgcgcgt 82
          |||||||||||||||||||||||||||
Sbjct: 58 cagtcaggtacctgaagtagcgcgcgt 84




>35379_ame-mir-275:mirbase
          Length = 100

 Score = 52.0 bits (26), Expect = 8e-08
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 56 cagtcaggtacctgaagtagcgcgcg 81
          ||||||||||||||||||||||||||
Sbjct: 64 cagtcaggtacctgaagtagcgcgcg 89




>34979_isc-mir-275:mirbase
          Length = 101

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 agtcaggtacctgaagtagcgcgcg 81
          |||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83




>35021_dpu-mir-275:mirbase
          Length = 103

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 agtcaggtacctgaagtagcgcgcg 81
          |||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83




>35548_bmo-mir-275:mirbase
          Length = 86

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 agtcaggtacctgaagtagcgcgcg 81
          |||||||||||||||||||||||||
Sbjct: 49 agtcaggtacctgaagtagcgcgcg 73




>37586_ngi-mir-275:mirbase
          Length = 71

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 agtcaggtacctgaagtagcgcgcg 81
          |||||||||||||||||||||||||
Sbjct: 42 agtcaggtacctgaagtagcgcgcg 66




>37617_nlo-mir-275:mirbase
          Length = 71

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 agtcaggtacctgaagtagcgcgcg 81
          |||||||||||||||||||||||||
Sbjct: 42 agtcaggtacctgaagtagcgcgcg 66




>37659_nvi-mir-275:mirbase
          Length = 94

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 agtcaggtacctgaagtagcgcgcg 81
          |||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83




>37765_tca-mir-275:mirbase
          Length = 71

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 agtcaggtacctgaagtagcgcgcg 81
          |||||||||||||||||||||||||
Sbjct: 43 agtcaggtacctgaagtagcgcgcg 67




>37766_tca-mir-275:mirbase
          Length = 71

 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 57 agtcaggtacctgaagtagcgcgcg 81
          |||||||||||||||||||||||||
Sbjct: 43 agtcaggtacctgaagtagcgcgcg 67




>35075_api-mir-275:mirbase
          Length = 62

 Score = 46.1 bits (23), Expect = 5e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 57 agtcaggtacctgaagtagcgcg 79
          |||||||||||||||||||||||
Sbjct: 40 agtcaggtacctgaagtagcgcg 62