miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36411_dme-mir-275:mirbase
Length = 98
Score = 194 bits (98), Expect = 8e-51
Identities = 98/98 (100%)
Strand = Plus / Plus
Query: 1 tgtaaagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaaagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtc 60
Query: 61 aggtacctgaagtagcgcgcgtggtggcagacatatat 98
||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aggtacctgaagtagcgcgcgtggtggcagacatatat 98
>37232_dsi-mir-275:mirbase
Length = 90
Score = 178 bits (90), Expect = 5e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 5 aagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggt 60
Query: 65 acctgaagtagcgcgcgtggtggcagacat 94
||||||||||||||||||||||||||||||
Sbjct: 61 acctgaagtagcgcgcgtggtggcagacat 90
>36194_der-mir-275:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 5 aagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggt 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggt 60
Query: 65 acctgaagtagcgcgcgtggtggcagacat 94
|||||||||||||||||||||| |||||||
Sbjct: 61 acctgaagtagcgcgcgtggtgccagacat 90
>37154_dse-mir-275:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 5 aagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggt 64
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 aagtctcctaccttgcgcgctaatcagtgaccggggcttgttttttatatacagtcaggt 60
Query: 65 acctgaagtagcgcgcgtggtggcagacat 94
||||||||||||||||||||||||||||||
Sbjct: 61 acctgaagtagcgcgcgtggtggcagacat 90
>37523_dya-mir-275:mirbase
Length = 90
Score = 168 bits (85), Expect = 5e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 6 agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 61
Query: 66 cctgaagtagcgcgcgtggtggcagacat 94
||||||||||||||||||||| |||||||
Sbjct: 62 cctgaagtagcgcgcgtggtgccagacat 90
>36116_dan-mir-275:mirbase
Length = 87
Score = 131 bits (66), Expect = 1e-31
Identities = 84/89 (94%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 6 agtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggta 65
|||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 1 agtctcctaccttgcgcgctaatcagtgaccggggctggtttttgcaa--cagtcaggta 58
Query: 66 cctgaagtagcgcgcgtggtggcagacat 94
|||||||||||||||||||||||||||||
Sbjct: 59 cctgaagtagcgcgcgtggtggcagacat 87
>36947_dps-mir-275:mirbase
Length = 90
Score = 117 bits (59), Expect = 2e-27
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 4 aaagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcagg 63
||||||||||||| |||||||||||||| |||||||||||||||||| | ||||||||
Sbjct: 1 aaagtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcagg 60
Query: 64 tacctgaagtagcgcgcgtggtg 86
|||||||||||||||||||||||
Sbjct: 61 tacctgaagtagcgcgcgtggtg 83
>36868_dpe-mir-275:mirbase
Length = 89
Score = 115 bits (58), Expect = 6e-27
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 5 aagtctcctaccttgcgcgctaatcagtgaccggggctggttttttatatacagtcaggt 64
|||||||||||| |||||||||||||| |||||||||||||||||| | |||||||||
Sbjct: 1 aagtctcctaccatgcgcgctaatcagagaccggggctggttttttcactgcagtcaggt 60
Query: 65 acctgaagtagcgcgcgtggtg 86
||||||||||||||||||||||
Sbjct: 61 acctgaagtagcgcgcgtggtg 82
>37368_dvi-mir-275:mirbase
Length = 92
Score = 97.6 bits (49), Expect = 1e-21
Identities = 72/79 (91%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 13 taccttgcgcgctaatcagtgaccggggctggttttttatat---acagtcaggtacctg 69
|||| ||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 7 taccgtgcgcgctaatcagtgaccggggctggttttggttatcccacagtcaggtacctg 66
Query: 70 aagtagcgcgcgtggtggc 88
|||||||||||||||||||
Sbjct: 67 aagtagcgcgcgtggtggc 85
>36791_dmo-mir-275:mirbase
Length = 92
Score = 95.6 bits (48), Expect = 6e-21
Identities = 73/79 (92%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 13 taccttgcgcgctaatcagtgaccggggctggtttt--ttatat-acagtcaggtacctg 69
|||| |||||||||||||||||||||||||||||| |||| | |||||||||||||||
Sbjct: 7 taccgtgcgcgctaatcagtgaccggggctggtttcgattatctcacagtcaggtacctg 66
Query: 70 aagtagcgcgcgtggtggc 88
|||||||||||||||||||
Sbjct: 67 aagtagcgcgcgtggtggc 85
>36283_dgr-mir-275:mirbase
Length = 92
Score = 93.7 bits (47), Expect = 2e-20
Identities = 67/73 (91%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 19 gcgcgctaatcagtgaccggggctggttttttatat---acagtcaggtacctgaagtag 75
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||
Sbjct: 13 gcgcgctaatcagtgaccggggctggttttgattatcccacagtcaggtacctgaagtag 72
Query: 76 cgcgcgtggtggc 88
|||||||||||||
Sbjct: 73 cgcgcgtggtggc 85
>37447_dwi-mir-275:mirbase
Length = 93
Score = 85.7 bits (43), Expect = 5e-18
Identities = 75/84 (89%), Gaps = 5/84 (5%)
Strand = Plus / Plus
Query: 7 gtctcctaccttgcgcgctaatcagtgaccggggctggtt--ttttat---atacagtca 61
||||| |||||||||||||||||||||||| |||||| | |||||| |||||||||
Sbjct: 1 gtctcttaccttgcgcgctaatcagtgaccagggctgagtaattttattcaatacagtca 60
Query: 62 ggtacctgaagtagcgcgcgtggt 85
||||||||||||||||||||||||
Sbjct: 61 ggtacctgaagtagcgcgcgtggt 84
>35204_aae-mir-275:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 56 cagtcaggtacctgaagtagcgcgcgtg 83
||||||||||||||||||||||||||||
Sbjct: 53 cagtcaggtacctgaagtagcgcgcgtg 80
>36031_cqu-mir-275:mirbase
Length = 101
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 56 cagtcaggtacctgaagtagcgcgcgtg 83
||||||||||||||||||||||||||||
Sbjct: 59 cagtcaggtacctgaagtagcgcgcgtg 86
>35299_aga-mir-275:mirbase
Length = 95
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 56 cagtcaggtacctgaagtagcgcgcgt 82
|||||||||||||||||||||||||||
Sbjct: 58 cagtcaggtacctgaagtagcgcgcgt 84
>35379_ame-mir-275:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 8e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 cagtcaggtacctgaagtagcgcgcg 81
||||||||||||||||||||||||||
Sbjct: 64 cagtcaggtacctgaagtagcgcgcg 89
>34979_isc-mir-275:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 agtcaggtacctgaagtagcgcgcg 81
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>35021_dpu-mir-275:mirbase
Length = 103
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 agtcaggtacctgaagtagcgcgcg 81
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>35548_bmo-mir-275:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 agtcaggtacctgaagtagcgcgcg 81
|||||||||||||||||||||||||
Sbjct: 49 agtcaggtacctgaagtagcgcgcg 73
>37586_ngi-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 agtcaggtacctgaagtagcgcgcg 81
|||||||||||||||||||||||||
Sbjct: 42 agtcaggtacctgaagtagcgcgcg 66
>37617_nlo-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 agtcaggtacctgaagtagcgcgcg 81
|||||||||||||||||||||||||
Sbjct: 42 agtcaggtacctgaagtagcgcgcg 66
>37659_nvi-mir-275:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 agtcaggtacctgaagtagcgcgcg 81
|||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83
>37765_tca-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 agtcaggtacctgaagtagcgcgcg 81
|||||||||||||||||||||||||
Sbjct: 43 agtcaggtacctgaagtagcgcgcg 67
>37766_tca-mir-275:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 agtcaggtacctgaagtagcgcgcg 81
|||||||||||||||||||||||||
Sbjct: 43 agtcaggtacctgaagtagcgcgcg 67
>35075_api-mir-275:mirbase
Length = 62
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 agtcaggtacctgaagtagcgcg 79
|||||||||||||||||||||||
Sbjct: 40 agtcaggtacctgaagtagcgcg 62
