miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36424_dme-mir-281-1:mirbase
Length = 90
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaactatttaatatcactgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaactatttaatatcactgt 60
Query: 61 catggaattgctctctttgtataatattcg 90
||||||||||||||||||||||||||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>36201_der-mir-281-1:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaactatttaatatcactgt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaaccatttaatatcactgt 60
Query: 61 catggaattgctctctttgtataatattcg 90
||||||||||||||||||||||||||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>37161_dse-mir-281-1:mirbase
Length = 90
Score = 170 bits (86), Expect = 1e-43
Identities = 89/90 (98%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaactatttaatatcactgt 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaaccatttaatatcactgt 60
Query: 61 catggaattgctctctttgtataatattcg 90
||||||||||||||||||||||||||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>37238_dsi-mir-281:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaactatttaatatcactgt 60
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaagcatttaatatcactgt 60
Query: 61 catggaattgctctctttgtataatattcg 90
||||||||||||||||||||||||||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>37530_dya-mir-281-1:mirbase
Length = 90
Score = 155 bits (78), Expect = 6e-39
Identities = 87/90 (96%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaactatttaatatcactgt 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaattcatttaatatcactgt 60
Query: 61 catggaattgctctctttgtataatattcg 90
||||||||||||||||||||||||||||||
Sbjct: 61 catggaattgctctctttgtataatattcg 90
>37454_dwi-mir-281-1:mirbase
Length = 90
Score = 107 bits (54), Expect = 1e-24
Identities = 84/92 (91%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccag--aaactatttaatatcact 58
|||||||||||||||||||||||||||||||||||||||| |||| |||| || |||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagttaaacgattt--taaaact 58
Query: 59 gtcatggaattgctctctttgtataatattcg 90
|||||||||||||||||||||||| |||||||
Sbjct: 59 gtcatggaattgctctctttgtatgatattcg 90
>36123_dan-mir-281-1:mirbase
Length = 86
Score = 105 bits (53), Expect = 5e-24
Identities = 81/90 (90%), Gaps = 4/90 (4%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaactatttaatatcactgt 60
|||||| |||||||||||||||||||||||||||||||||| || ||| ||||||
Sbjct: 1 cgaatacgtgaataaagagagctgtccgtcgacagtccagatac----ctataacactgt 56
Query: 61 catggaattgctctctttgtataatattcg 90
||||||||||||||||||||||||||||||
Sbjct: 57 catggaattgctctctttgtataatattcg 86
>37375_dvi-mir-281-1:mirbase
Length = 88
Score = 105 bits (53), Expect = 5e-24
Identities = 83/91 (91%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaac-tatttaatatcactg 59
|||||||||||||||||||||||||||||||||||||||| ||| || |||| ||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtaacaaatgtaat---actg 57
Query: 60 tcatggaattgctctctttgtataatattcg 90
||||||||||||||||||||||| |||||||
Sbjct: 58 tcatggaattgctctctttgtatgatattcg 88
>36290_dgr-mir-281-1:mirbase
Length = 88
Score = 101 bits (51), Expect = 8e-23
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaactatttaatatcactgt 60
|||||||||||||||||||||||||||||||||||||||| | |||| || |||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtataaattt--taatactgt 58
Query: 61 catggaattgctctctttgtataatattcg 90
|||||||||||||||||||||| |||||||
Sbjct: 59 catggaattgctctctttgtatgatattcg 88
>36798_dmo-mir-281-1:mirbase
Length = 88
Score = 101 bits (51), Expect = 8e-23
Identities = 81/90 (90%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaactatttaatatcactgt 60
|||||||||||||||||||||||||||||||||||||||| || ||| || |||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtaaagatt--gtaaaactgt 58
Query: 61 catggaattgctctctttgtataatattcg 90
|||||||||||||||||||||| |||||||
Sbjct: 59 catggaattgctctctttgtatgatattcg 88
>36875_dpe-mir-281-1:mirbase
Length = 88
Score = 97.6 bits (49), Expect = 1e-21
Identities = 82/91 (90%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtcca-gaaactatttaatatcactg 59
|||||| |||||||||||||||||||||||||||||| | | | | |||||||| |||
Sbjct: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatttaata---ctg 57
Query: 60 tcatggaattgctctctttgtataatattcg 90
|||||||||||||||||||||||||||||||
Sbjct: 58 tcatggaattgctctctttgtataatattcg 88
>36955_dps-mir-281-1:mirbase
Length = 88
Score = 97.6 bits (49), Expect = 1e-21
Identities = 82/91 (90%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 cgaataagtgaataaagagagctgtccgtcgacagtcca-gaaactatttaatatcactg 59
|||||| |||||||||||||||||||||||||||||| | | | | |||||||| |||
Sbjct: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatttaata---ctg 57
Query: 60 tcatggaattgctctctttgtataatattcg 90
|||||||||||||||||||||||||||||||
Sbjct: 58 tcatggaattgctctctttgtataatattcg 88
>36291_dgr-mir-281-2:mirbase
Length = 93
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
|||||||||||||||||||||||||||||||||||
Sbjct: 59 actgtcatggaattgctctctttgtataatattcg 93
>36799_dmo-mir-281-2:mirbase
Length = 93
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
|||||||||||||||||||||||||||||||||||
Sbjct: 59 actgtcatggaattgctctctttgtataatattcg 93
>36876_dpe-mir-281-2:mirbase
Length = 91
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
|||||||||||||||||||||||||||||||||||
Sbjct: 57 actgtcatggaattgctctctttgtataatattcg 91
>36956_dps-mir-281-2:mirbase
Length = 91
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
|||||||||||||||||||||||||||||||||||
Sbjct: 57 actgtcatggaattgctctctttgtataatattcg 91
>37376_dvi-mir-281-2:mirbase
Length = 91
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
|||||||||||||||||||||||||||||||||||
Sbjct: 57 actgtcatggaattgctctctttgtataatattcg 91
>37455_dwi-mir-281-2:mirbase
Length = 97
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
|||||||||||||||||||||||||||||||||||
Sbjct: 63 actgtcatggaattgctctctttgtataatattcg 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 aagagagctgtccgtcgacagtccag 40
||||||||| ||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagtccag 40
>37531_dya-mir-281-2:mirbase
Length = 92
Score = 69.9 bits (35), Expect = 3e-13
Identities = 35/35 (100%)
Strand = Plus / Plus
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
|||||||||||||||||||||||||||||||||||
Sbjct: 58 actgtcatggaattgctctctttgtataatattcg 92
>36124_dan-mir-281-2:mirbase
Length = 94
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
||||||||||||||||||||||||||||| |||||
Sbjct: 60 actgtcatggaattgctctctttgtataacattcg 94
>36202_der-mir-281-2:mirbase
Length = 92
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
||||||||||||||||||||||||||||| |||||
Sbjct: 58 actgtcatggaattgctctctttgtataacattcg 92
>36426_dme-mir-281-2:mirbase
Length = 92
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
||||||||||||||||||||||||||||| |||||
Sbjct: 58 actgtcatggaattgctctctttgtataacattcg 92
>36427_dme-mir-281-2:mirbase
Length = 92
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
||||||||||||||||||||||||||||| |||||
Sbjct: 58 actgtcatggaattgctctctttgtataacattcg 92
>37162_dse-mir-281-2:mirbase
Length = 92
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 56 actgtcatggaattgctctctttgtataatattcg 90
||||||||||||||||||||||||||||| |||||
Sbjct: 58 actgtcatggaattgctctctttgtataacattcg 92
>35210_aae-mir-281:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 tcactgtcatggaattgctctcttt 78
|||||||||||||||||||||||||
Sbjct: 54 tcactgtcatggaattgctctcttt 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagt 36
||||||||||||| ||||||||||||
Sbjct: 17 aataaagagagctatccgtcgacagt 42
>35305_aga-mir-281:mirbase
Length = 102
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 tcactgtcatggaattgctctcttt 78
|||||||||||||||||||||||||
Sbjct: 53 tcactgtcatggaattgctctcttt 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagt 36
||||||||||||| ||||||||||||
Sbjct: 16 aataaagagagctatccgtcgacagt 41
>36038_cqu-mir-281:mirbase
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 tcactgtcatggaattgctctcttt 78
|||||||||||||||||||||||||
Sbjct: 59 tcactgtcatggaattgctctcttt 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagt 36
||||||||||||| ||||||||||||
Sbjct: 22 aataaagagagctatccgtcgacagt 47
>35386_ame-mir-281:mirbase
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 cactgtcatggaattgctctctttgta 81
|||||||||||| ||||||||||||||
Sbjct: 58 cactgtcatggagttgctctctttgta 84
>38122_bma-mir-281:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 actgtcatggaattgctctcttt 78
|||||||||||||||||||||||
Sbjct: 51 actgtcatggaattgctctcttt 73
>25355_odi-mir-281:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 actgtcatggaattgctctctt 77
||||||||||||||||||||||
Sbjct: 64 actgtcatggaattgctctctt 85
>37589_ngi-mir-281:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 55 cactgtcatggaattgctctctttgt 80
|||||||||||| |||||||||||||
Sbjct: 44 cactgtcatggacttgctctctttgt 69
>37620_nlo-mir-281:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 55 cactgtcatggaattgctctctttgt 80
|||||||||||| |||||||||||||
Sbjct: 44 cactgtcatggacttgctctctttgt 69
>37663_nvi-mir-281:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 55 cactgtcatggaattgctctctttgt 80
|||||||||||| |||||||||||||
Sbjct: 58 cactgtcatggacttgctctctttgt 83
>24703_bfl-mir-281:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 cactgtcatggaattgctctcttt 78
|||||||||||| |||||||||||
Sbjct: 56 cactgtcatggagttgctctcttt 79
>35081_api-mir-281:mirbase
Length = 62
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 cactgtcatggaattgctctcttt 78
|||||||||||| |||||||||||
Sbjct: 37 cactgtcatggagttgctctcttt 60
>35557_bmo-mir-281:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 cactgtcatggaattgctctcttt 78
|||||||||||| |||||||||||
Sbjct: 45 cactgtcatggagttgctctcttt 68
>37781_tca-mir-281:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 cactgtcatggaattgctctcttt 78
|||||||||||| |||||||||||
Sbjct: 42 cactgtcatggagttgctctcttt 65
>37782_tca-mir-281:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 cactgtcatggaattgctctcttt 78
|||||||||||| |||||||||||
Sbjct: 42 cactgtcatggagttgctctcttt 65
