miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>36437_dme-mir-286:mirbase
          Length = 100

 Score =  198 bits (100), Expect = 5e-52
 Identities = 100/100 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaaattgaatggcgaatgtcggtatggtctctttttcaaagaaaggtttcgattaagc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttaaaattgaatggcgaatgtcggtatggtctctttttcaaagaaaggtttcgattaagc 60

                                                   
Query: 61  gaagtgactagaccgaacactcgtgctataattttaaaat 100
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gaagtgactagaccgaacactcgtgctataattttaaaat 100




>37243_dsi-mir-286:mirbase
          Length = 100

 Score =  174 bits (88), Expect = 8e-45
 Identities = 98/100 (98%), Gaps = 1/100 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaaattgaatggcgaatgtcggtatggtctctttttc-aaagaaaggtttcgattaag 59
           ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct: 1   ttaaaattgaatggcgaatgtcggtatggtctctttttccaaagaaaggtttcgatcaag 60

                                                   
Query: 60  cgaagtgactagaccgaacactcgtgctataattttaaaa 99
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cgaagtgactagaccgaacactcgtgctataattttaaaa 100




>37167_dse-mir-286:mirbase
          Length = 99

 Score =  172 bits (87), Expect = 3e-44
 Identities = 96/99 (96%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttaaaattgaatggcgaatgtcggtatggtctctttttcaaagaaaggtttcgattaagc 60
          ||||||||||||||||||||||||||||||||||||||| || |||||||||||| ||||
Sbjct: 1  ttaaaattgaatggcgaatgtcggtatggtctctttttccaataaaggtttcgatcaagc 60

                                                 
Query: 61 gaagtgactagaccgaacactcgtgctataattttaaaa 99
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gaagtgactagaccgaacactcgtgctataattttaaaa 99




>36207_der-mir-286:mirbase
          Length = 98

 Score =  165 bits (83), Expect = 7e-42
 Identities = 96/99 (96%), Gaps = 1/99 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttaaaattgaatggcgaatgtcggtatggtctctttttcaaagaaaggtttcgattaagc 60
          ||||||||||||||||||||||||||||||||||||||||||||| |||||||||  |||
Sbjct: 1  ttaaaattgaatggcgaatgtcggtatggtctctttttcaaagaa-ggtttcgatcgagc 59

                                                 
Query: 61 gaagtgactagaccgaacactcgtgctataattttaaaa 99
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gaagtgactagaccgaacactcgtgctataattttaaaa 98




>37536_dya-mir-286:mirbase
          Length = 98

 Score =  165 bits (83), Expect = 7e-42
 Identities = 96/99 (96%), Gaps = 1/99 (1%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttaaaattgaatggcgaatgtcggtatggtctctttttcaaagaaaggtttcgattaagc 60
          |||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||
Sbjct: 1  ttaaaattgaatggcgaatgtcggtatggtctctttttcaaa-agaggtttcgatcaagc 59

                                                 
Query: 61 gaagtgactagaccgaacactcgtgctataattttaaaa 99
          |||||||||||||||||||||||||||||||||||||||
Sbjct: 60 gaagtgactagaccgaacactcgtgctataattttaaaa 98




>36129_dan-mir-286:mirbase
          Length = 103

 Score =  107 bits (54), Expect = 2e-24
 Identities = 91/103 (88%), Gaps = 4/103 (3%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttaaaattgaatggcgaatgtcggtatggtctctttttcaaagaaa----ggtttcgatt 56
           ||||||||||||||||| ||||||||||||| |||||||| | |||    |||| | |  
Sbjct: 1   ttaaaattgaatggcgattgtcggtatggtcgctttttcacaaaaaaattggttaccaac 60

                                                      
Query: 57  aagcgaagtgactagaccgaacactcgtgctataattttaaaa 99
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aagcgaagtgactagaccgaacactcgtgctataattttaaaa 103




>36880_dpe-mir-286:mirbase
          Length = 96

 Score = 91.7 bits (46), Expect = 9e-20
 Identities = 84/96 (87%), Gaps = 3/96 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttaaaattgaatggcgaatgtcggtatggtctctttttcaaagaaaggtttcgattaagc 60
          |||||||| |||||||| ||||||| ||||| ||||||   ||   |||| |||| ||||
Sbjct: 1  ttaaaattaaatggcgattgtcggtttggtcgctttttaccag---ggttccgatcaagc 57

                                              
Query: 61 gaagtgactagaccgaacactcgtgctataatttta 96
          ||||||||||||||||||||||||||||||||||||
Sbjct: 58 gaagtgactagaccgaacactcgtgctataatttta 93




>36961_dps-mir-286:mirbase
          Length = 97

 Score = 91.7 bits (46), Expect = 9e-20
 Identities = 84/96 (87%), Gaps = 3/96 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  ttaaaattgaatggcgaatgtcggtatggtctctttttcaaagaaaggtttcgattaagc 60
          |||||||| |||||||| ||||||| ||||| ||||||   ||   |||| |||| ||||
Sbjct: 1  ttaaaattaaatggcgattgtcggtttggtcgctttttaccag---ggttccgatcaagc 57

                                              
Query: 61 gaagtgactagaccgaacactcgtgctataatttta 96
          ||||||||||||||||||||||||||||||||||||
Sbjct: 58 gaagtgactagaccgaacactcgtgctataatttta 93




>36296_dgr-mir-286-1:mirbase
          Length = 104

 Score = 75.8 bits (38), Expect = 5e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 62  aagtgactagaccgaacactcgtgctataattttaaaa 99
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 67  aagtgactagaccgaacactcgtgctataattttaaaa 104



 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 1  ttaaaattgaatggcgaatgtcggtatggtctctttt 37
          |||||||| |||||||| ||||||||||||| |||||
Sbjct: 1  ttaaaattaaatggcgattgtcggtatggtcgctttt 37




>36297_dgr-mir-286-2:mirbase
          Length = 104

 Score = 75.8 bits (38), Expect = 5e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 62  aagtgactagaccgaacactcgtgctataattttaaaa 99
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 67  aagtgactagaccgaacactcgtgctataattttaaaa 104



 Score = 50.1 bits (25), Expect = 3e-07
 Identities = 34/37 (91%)
 Strand = Plus / Plus

                                               
Query: 1  ttaaaattgaatggcgaatgtcggtatggtctctttt 37
          |||||||| |||||||| ||||||||||||| |||||
Sbjct: 1  ttaaaattaaatggcgattgtcggtatggtcgctttt 37




>36804_dmo-mir-286:mirbase
          Length = 103

 Score = 75.8 bits (38), Expect = 5e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 62  aagtgactagaccgaacactcgtgctataattttaaaa 99
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 66  aagtgactagaccgaacactcgtgctataattttaaaa 103



 Score = 65.9 bits (33), Expect = 5e-12
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                   
Query: 1  ttaaaattgaatggcgaatgtcggtatggtctctttttcaa 41
          |||||||| |||||||| |||||||||||||||||||||||
Sbjct: 1  ttaaaattaaatggcgattgtcggtatggtctctttttcaa 41




>37381_dvi-mir-286:mirbase
          Length = 101

 Score = 75.8 bits (38), Expect = 5e-15
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 62  aagtgactagaccgaacactcgtgctataattttaaaa 99
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 64  aagtgactagaccgaacactcgtgctataattttaaaa 101



 Score = 60.0 bits (30), Expect = 3e-10
 Identities = 39/42 (92%)
 Strand = Plus / Plus

                                                    
Query: 1  ttaaaattgaatggcgaatgtcggtatggtctctttttcaaa 42
          |||||||| |||||||| ||||||||||||| ||||||||||
Sbjct: 1  ttaaaattaaatggcgattgtcggtatggtcgctttttcaaa 42




>37460_dwi-mir-286:mirbase
          Length = 108

 Score = 71.9 bits (36), Expect = 8e-14
 Identities = 36/36 (100%)
 Strand = Plus / Plus

                                               
Query: 62  aagtgactagaccgaacactcgtgctataattttaa 97
           ||||||||||||||||||||||||||||||||||||
Sbjct: 73  aagtgactagaccgaacactcgtgctataattttaa 108



 Score = 58.0 bits (29), Expect = 1e-09
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 3  aaaattgaatggcgaatgtcggtatggtctctttttc 39
          ||||||||||||||| ||||||||| |||||||||||
Sbjct: 1  aaaattgaatggcgattgtcggtatagtctctttttc 37




>35216_aae-mir-286b-1:mirbase
          Length = 97

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 63 agtgactagaccgaacactcgt 84
          ||||||||||||||||||||||
Sbjct: 64 agtgactagaccgaacactcgt 85




>35217_aae-mir-286b-2:mirbase
          Length = 97

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 63 agtgactagaccgaacactcgt 84
          ||||||||||||||||||||||
Sbjct: 64 agtgactagaccgaacactcgt 85




>35215_aae-mir-286a:mirbase
          Length = 97

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 63 agtgactagaccgaacactcg 83
          |||||||||||||||||||||
Sbjct: 61 agtgactagaccgaacactcg 81




>35308_aga-mir-286:mirbase
          Length = 96

 Score = 42.1 bits (21), Expect = 7e-05
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 63 agtgactagaccgaacactcg 83
          |||||||||||||||||||||
Sbjct: 59 agtgactagaccgaacactcg 79