miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36208_der-mir-287:mirbase
Length = 90
Score = 145 bits (73), Expect = 6e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 10 ggatgtatgggtgtgtagggtctgaaattttgcacacatttacaataattgtaaatgtgt 69
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 ggatgtatgggtgtgtgggctctgaaattttgcacacatttacaataattgtaaatgtgt 66
Query: 70 tgaaaatcgtttgcacgactg 90
|||||||||||||||||||||
Sbjct: 67 tgaaaatcgtttgcacgactg 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 43 acacatttacaataattgtaaatgtgt 69
||||||||||||| |||||||||||||
Sbjct: 66 acacatttacaattattgtaaatgtgt 40
>37168_dse-mir-287:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 23 tgtagggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttg 82
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtagggtcggaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttg 60
Query: 83 cacgactgtga 93
|||||||||||
Sbjct: 61 cacgactgtga 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 43 acacatttacaataattgtaaatgtgt 69
||||||||||||| |||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>37244_dsi-mir-287:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 23 tgtagggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttg 82
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtagggtcggaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttg 60
Query: 83 cacgactgtga 93
|||||||||||
Sbjct: 61 cacgactgtga 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 43 acacatttacaataattgtaaatgtgt 69
||||||||||||| |||||||||||||
Sbjct: 47 acacatttacaattattgtaaatgtgt 21
>36130_dan-mir-287:mirbase
Length = 73
Score = 121 bits (61), Expect = 9e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 27 gggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacg 86
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcaca 68
Query: 87 actgt 91
|||||
Sbjct: 69 actgt 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 43 acacatttacaataattgtaaatgtgt 69
||||||||||||| |||||||||||||
Sbjct: 51 acacatttacaattattgtaaatgtgt 25
>36962_dps-mir-287:mirbase
Length = 80
Score = 119 bits (60), Expect = 4e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 22 gtgtagggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgttt 81
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtgtggggcctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgttt 68
Query: 82 gcacgactgtga 93
|||| |||||||
Sbjct: 69 gcacaactgtga 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 43 acacatttacaataattgtaaatgtgt 69
||||||||||||| |||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>37537_dya-mir-287:mirbase
Length = 77
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 27 gggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacg 86
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 11 gggtctgaaattttgcacacatttacagtaattgtaaatgtgttgaaaatcgtttgcatg 70
Query: 87 actgtga 93
|||||||
Sbjct: 71 actgtga 77
>36881_dpe-mir-287:mirbase
Length = 75
Score = 111 bits (56), Expect = 9e-26
Identities = 62/64 (96%)
Strand = Plus / Plus
Query: 22 gtgtagggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgttt 81
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gtgtggggcctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgttt 68
Query: 82 gcac 85
||||
Sbjct: 69 gcac 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 43 acacatttacaataattgtaaatgtgt 69
||||||||||||| |||||||||||||
Sbjct: 56 acacatttacaattattgtaaatgtgt 30
>36298_dgr-mir-287-1:mirbase
Length = 73
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 32 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactgt 91
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgt 71
Query: 92 ga 93
||
Sbjct: 72 ga 73
>36299_dgr-mir-287-2:mirbase
Length = 73
Score = 107 bits (54), Expect = 1e-24
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 32 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactgt 91
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct: 12 tgaaattttgcacacatttacaatatttgtaaatgtgttgaaaatcgtttgcacaactgt 71
Query: 92 ga 93
||
Sbjct: 72 ga 73
>36805_dmo-mir-287:mirbase
Length = 62
Score = 107 bits (54), Expect = 1e-24
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 32 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 60
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 43 acacatttacaataattgtaaatgtgt 69
||||||||||||| |||||||||||||
Sbjct: 44 acacatttacaattattgtaaatgtgt 18
>37382_dvi-mir-287:mirbase
Length = 68
Score = 107 bits (54), Expect = 1e-24
Identities = 54/54 (100%)
Strand = Plus / Plus
Query: 32 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 85
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 66
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 43 acacatttacaataattgtaaatgtgt 69
||||||||||||| |||||||||||||
Sbjct: 50 acacatttacaattattgtaaatgtgt 24
>37461_dwi-mir-287:mirbase
Length = 73
Score = 105 bits (53), Expect = 5e-24
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 29 gtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 85
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 13 gtctgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcac 69
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 43 acacatttacaataattgtaaatgtgt 69
|||||||||||||||||||||||||||
Sbjct: 53 acacatttacaataattgtaaatgtgt 27
