miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00788;mir-287;AAPQ01007040.1/1493379-1493287 7220:Drosophila
erecta
Length = 93
Score = 145 bits (73), Expect = 1e-34
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 10 ggatgtatgggtgtgtagggtctgaaattttgcacacatttacaataattgtaaatgtgt 69
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 ggatgtatgggtgtgtgggctctgaaattttgcacacatttacaataattgtaaatgtgt 69
Query: 70 tgaaaatcgtttgcacgactg 90
|||||||||||||||||||||
Sbjct: 70 tgaaaatcgtttgcacgactg 90
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 43 acacatttacaataattgtaaatgtgt 69
||||||||||||| |||||||||||||
Sbjct: 69 acacatttacaattattgtaaatgtgt 43
>RF00788;mir-287;AAPP01015675.1/1283611-1283521 7217:Drosophila
ananassae
Length = 91
Score = 125 bits (63), Expect = 1e-28
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 27 gggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacg 86
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 gggtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcaca 84
Query: 87 actgtga 93
|||||||
Sbjct: 85 actgtga 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 43 acacatttacaataattgtaaatgtgt 69
||||||||||||| |||||||||||||
Sbjct: 67 acacatttacaattattgtaaatgtgt 41
>RF00788;mir-287;AAEU02000290.1/178244-178333 7245:Drosophila
yakuba
Length = 90
Score = 125 bits (63), Expect = 1e-28
Identities = 83/89 (93%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 5 gccggggatgtatgggtgtgtagggtctgaaattttgcacacatttacaataattgtaaa 64
|||| ||||||||||||||| |||||||||||||||||||||||||| ||||||||||
Sbjct: 5 gccgtggatgtatgggtgtg---ggtctgaaattttgcacacatttacagtaattgtaaa 61
Query: 65 tgtgttgaaaatcgtttgcacgactgtga 93
|||||||||||||||||||| ||||||||
Sbjct: 62 tgtgttgaaaatcgtttgcatgactgtga 90
>RF00788;mir-287;AAPU01010664.1/17553-17645 7230:Drosophila
mojavensis
Length = 93
Score = 115 bits (58), Expect = 1e-25
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 32 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactgt 91
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 32 tgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgt 91
Query: 92 ga 93
||
Sbjct: 92 ga 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 43 acacatttacaataattgtaaatgtgt 69
||||||||||||| |||||||||||||
Sbjct: 69 acacatttacaattattgtaaatgtgt 43
>RF00788;mir-287;AAFS01000718.1/2117-2027 46245:Drosophila
pseudoobscura pseudoobscura
Length = 91
Score = 111 bits (56), Expect = 2e-24
Identities = 59/60 (98%)
Strand = Plus / Plus
Query: 34 aaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgactgtga 93
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 32 aaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacaactgtga 91
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 43 acacatttacaataattgtaaatgtgt 69
||||||||||||| |||||||||||||
Sbjct: 67 acacatttacaattattgtaaatgtgt 41
>RF00788;mir-287;AAGH01003987.1/3230-3289 7240:Drosophila simulans
Length = 60
Score = 111 bits (56), Expect = 2e-24
Identities = 56/56 (100%)
Strand = Plus / Minus
Query: 33 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgac 88
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 56 gaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcacgac 1
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 43 acacatttacaataattgtaaatgtgt 69
||||||||||||| |||||||||||||
Sbjct: 20 acacatttacaattattgtaaatgtgt 46
>RF00788;mir-287;AAQB01006734.1/267050-266959 7260:Drosophila
willistoni
Length = 92
Score = 105 bits (53), Expect = 1e-22
Identities = 56/57 (98%)
Strand = Plus / Plus
Query: 29 gtctgaaattttgcacacatttacaataattgtaaatgtgttgaaaatcgtttgcac 85
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 27 gtctgaaattttgcacacatttacaattattgtaaatgtgttgaaaatcgtttgcac 83
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 43 acacatttacaataattgtaaatgtgt 69
|||||||||||||||||||||||||||
Sbjct: 67 acacatttacaataattgtaaatgtgt 41
