miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>37169_dse-mir-288:mirbase
          Length = 97

 Score =  176 bits (89), Expect = 2e-45
 Identities = 92/93 (98%)
 Strand = Plus / Plus

                                                                      
Query: 5  catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
          ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5  catgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttg 64

                                           
Query: 65 gtttcatgtcgatttcatttcatgacacggccg 97
          |||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggccg 97




>37245_dsi-mir-288:mirbase
          Length = 97

 Score =  176 bits (89), Expect = 2e-45
 Identities = 92/93 (98%)
 Strand = Plus / Plus

                                                                      
Query: 5  catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
          ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5  catgtcgtaattagcggagcacggcattgccggcgataattaatgacggtggtcacgttg 64

                                           
Query: 65 gtttcatgtcgatttcatttcatgacacggccg 97
          |||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggccg 97




>37538_dya-mir-288:mirbase
          Length = 96

 Score =  167 bits (84), Expect = 2e-42
 Identities = 90/92 (97%)
 Strand = Plus / Plus

                                                                      
Query: 5  catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
          ||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct: 5  catgtcgtaattagcggagcacggcgttgccggcgataattaatgacggtggtcacgttg 64

                                          
Query: 65 gtttcatgtcgatttcatttcatgacacggcc 96
          ||||||||||||||||||||||||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcatgacacggcc 96




>36209_der-mir-288:mirbase
          Length = 97

 Score =  153 bits (77), Expect = 3e-38
 Identities = 89/93 (95%)
 Strand = Plus / Plus

                                                                      
Query: 5  catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
          |||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct: 5  catgtcgtaattagcggagctcggcgttgccggcgataattaatgacggtggtcacgttg 64

                                           
Query: 65 gtttcatgtcgatttcatttcatgacacggccg 97
          |||||||||||||||||||||| ||||||||||
Sbjct: 65 gtttcatgtcgatttcatttcaggacacggccg 97




>36131_dan-mir-288:mirbase
          Length = 92

 Score =  135 bits (68), Expect = 6e-33
 Identities = 86/92 (93%)
 Strand = Plus / Plus

                                                                      
Query: 5  catgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttg 64
          ||||||||||||||| | |||| | || |||||||||||||||||||| |||||||||||
Sbjct: 1  catgtcgtaattagcagggcacagaattgccggcgataattaatgacgttggtcacgttg 60

                                          
Query: 65 gtttcatgtcgatttcatttcatgacacggcc 96
          ||||||||||||||||||||||||||||||||
Sbjct: 61 gtttcatgtcgatttcatttcatgacacggcc 92




>36963_dps-mir-288:mirbase
          Length = 96

 Score =  135 bits (68), Expect = 6e-33
 Identities = 89/96 (92%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggccatgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacg 61
          |||||||||||||||||| | | || || | |||||||||||||||||||| ||||||||
Sbjct: 1  ggccatgtcgtaattagcagggtacagcgttgccggcgataattaatgacgttggtcacg 60

                                              
Query: 62 ttggtttcatgtcgatttcatttcatgacacggccg 97
          ||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttggtttcatgtcgatttcatttcatgacacggccg 96




>36882_dpe-mir-288:mirbase
          Length = 96

 Score =  127 bits (64), Expect = 2e-30
 Identities = 88/96 (91%)
 Strand = Plus / Plus

                                                                      
Query: 2  ggccatgtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacg 61
          |||||||||||||||||| | | || || | |||||||| ||||||||||| ||||||||
Sbjct: 1  ggccatgtcgtaattagcagggtacagcgttgccggcgaaaattaatgacgttggtcacg 60

                                              
Query: 62 ttggtttcatgtcgatttcatttcatgacacggccg 97
          ||||||||||||||||||||||||||||||||||||
Sbjct: 61 ttggtttcatgtcgatttcatttcatgacacggccg 96




>36806_dmo-mir-288:mirbase
          Length = 96

 Score =  123 bits (62), Expect = 2e-29
 Identities = 83/90 (92%)
 Strand = Plus / Plus

                                                                      
Query: 8  gtcgtaattagcggagcacggcatcgccggcgataattaatgacggtggtcacgttggtt 67
          |||||||||||| | |||| || | || ||||||||||||||||| ||||||||||||||
Sbjct: 7  gtcgtaattagctgtgcacagcgttgctggcgataattaatgacgttggtcacgttggtt 66

                                        
Query: 68 tcatgtcgatttcatttcatgacacggccg 97
          ||||||||||||||||||||||||||||||
Sbjct: 67 tcatgtcgatttcatttcatgacacggccg 96




>37462_dwi-mir-288:mirbase
          Length = 94

 Score =  117 bits (59), Expect = 2e-27
 Identities = 62/63 (98%)
 Strand = Plus / Plus

                                                                      
Query: 35 cggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcatgacacgg 94
          |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 32 cggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacgg 91

             
Query: 95 ccg 97
          |||
Sbjct: 92 ccg 94




>36300_dgr-mir-288:mirbase
          Length = 96

 Score =  115 bits (58), Expect = 6e-27
 Identities = 61/62 (98%)
 Strand = Plus / Plus

                                                                      
Query: 36 ggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcatgacacggc 95
          ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35 ggcgataattaatgacgttggtcacgttggtttcatgtcgatttcatttcatgacacggc 94

            
Query: 96 cg 97
          ||
Sbjct: 95 cg 96




>37383_dvi-mir-288:mirbase
          Length = 97

 Score =  107 bits (54), Expect = 1e-24
 Identities = 60/62 (96%)
 Strand = Plus / Plus

                                                                      
Query: 36 ggcgataattaatgacggtggtcacgttggtttcatgtcgatttcatttcatgacacggc 95
          ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 36 ggcgataattaatgactttggtcacgttggtttcatgtcgatttcatttcatgacacggc 95

            
Query: 96 cg 97
          ||
Sbjct: 96 cg 97