miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36443_dme-mir-304:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
Query: 61 tttgcaattggagattgctcgagactgc 88
||||||||||||||||||||||||||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>36211_der-mir-304:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttgagccatttgacgcactcac 60
Query: 61 tttgcaattggagattgctcgagactgc 88
||||||||||||||||||||||||||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>37171_dse-mir-304:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttgagccatttgacgcactcac 60
Query: 61 tttgcaattggagattgctcgagactgc 88
||||||||||||||||||||||||||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>37248_dsi-mir-304:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttgagccatttgacgcactcac 60
Query: 61 tttgcaattggagattgctcgagactgc 88
||||||||||||||||||||||||||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>37540_dya-mir-304:mirbase
Length = 88
Score = 167 bits (84), Expect = 2e-42
Identities = 87/88 (98%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttgagccatttgacgcactcac 60
Query: 61 tttgcaattggagattgctcgagactgc 88
||||||||||||||||||||||||||||
Sbjct: 61 tttgcaattggagattgctcgagactgc 88
>36133_dan-mir-304:mirbase
Length = 88
Score = 143 bits (72), Expect = 2e-35
Identities = 84/88 (95%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
|||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgagccatttgacggactcac 60
Query: 61 tttgcaattggagattgctcgagactgc 88
||||||| ||||||||||||||||||||
Sbjct: 61 tttgcaactggagattgctcgagactgc 88
>36965_dps-mir-304:mirbase
Length = 88
Score = 127 bits (64), Expect = 1e-30
Identities = 82/88 (93%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtttaagccatttgacgcactcac 60
|||||||||||||||||||||||||||||||||||| ||| || |||||||| |||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcgatttgaggcatttgacacactcac 60
Query: 61 tttgcaattggagattgctcgagactgc 88
||||||| |||||||||||||| |||||
Sbjct: 61 tttgcaactggagattgctcgaaactgc 88
>36807_dmo-mir-304:mirbase
Length = 89
Score = 121 bits (61), Expect = 9e-29
Identities = 83/89 (93%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcggttta-agccatttgacgcactca 59
|||||||||| ||||||||||||||||||||||||| ||| | | ||||||||||||||
Sbjct: 1 gcagcattgattaatctcaatttgtaaatgtgagcgatttttaactatttgacgcactca 60
Query: 60 ctttgcaattggagattgctcgagactgc 88
|||||||||||||||||||||||||||||
Sbjct: 61 ctttgcaattggagattgctcgagactgc 89
>36301_dgr-mir-304:mirbase
Length = 89
Score = 117 bits (59), Expect = 1e-27
Identities = 81/86 (94%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcggtt--taagccatttgacgcactc 58
|||||||||||||||||||||||||||||||||||| || |||| |||||||||||||
Sbjct: 1 gcagcattgaataatctcaatttgtaaatgtgagcgattattaaga-atttgacgcactc 59
Query: 59 actttgcaattggagattgctcgaga 84
||||||||||||||||||||||||||
Sbjct: 60 actttgcaattggagattgctcgaga 85
>37384_dvi-mir-304:mirbase
Length = 89
Score = 113 bits (57), Expect = 2e-26
Identities = 79/85 (92%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 1 gcagcattgaataatctcaatttgtaaatgtgagcggttt-aagccatttgacgcactca 59
|||||||||| ||||||||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 1 gcagcattgattaatctcaatttgtaaatgtgagcgattttaaagtatttgacgcactca 60
Query: 60 ctttgcaattggagattgctcgaga 84
|||||||||||||||||||||||||
Sbjct: 61 ctttgcaattggagattgctcgaga 85
>37463_dwi-mir-304:mirbase
Length = 89
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 cattgaataatctcaatttgtaaatgtgagcggtttaag-ccatttgacgcactcacttt 63
|||||| ||||||||||||||||||||||||| ||||| ||||| || |||||||||||
Sbjct: 5 cattgattaatctcaatttgtaaatgtgagcgatttaaatccattcgatgcactcacttt 64
Query: 64 gcaattggagattgctcgaga 84
|||||||||||||||||||||
Sbjct: 65 gcaattggagattgctcgaga 85
