miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00716;mir-3;AASV01026474.1/1205-1274 7240:Drosophila simulans
Length = 70
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 1 attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 61
Query: 61 tcctataat 69
|||||||||
Sbjct: 62 tcctataat 70
>RF00716;mir-3;AAPP01018770.1/56527-56595 7217:Drosophila
ananassae
Length = 69
Score = 113 bits (57), Expect = 3e-25
Identities = 67/69 (97%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 2 attatacgacaaaccttgttcggttttgccaatttcctag-cagcactgggtaaagtttg 60
Query: 61 tcctataat 69
|||||||||
Sbjct: 61 tcctataat 69
>RF00716;mir-3;AAFS01000371.1/25053-25121 46245:Drosophila
pseudoobscura pseudoobscura
Length = 69
Score = 50.1 bits (25), Expect = 3e-06
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 attatacgacaaaccttgttcggttttgccaatttccaagccagcactgggtaaagtttg 60
||||||||| |||| |||||| |||||||||| || | || |||||||||| |||||||
Sbjct: 2 attatacgataaactttgttcagttttgccaacttgcttgc-agcactgggtgaagtttg 60
Query: 61 tcctataat 69
|| ||||||
Sbjct: 61 tcttataat 69
