miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36469_dme-mir-316:mirbase
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>37183_dse-mir-316:mirbase
Length = 89
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttccacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>37259_dsi-mir-316:mirbase
Length = 89
Score = 168 bits (85), Expect = 4e-43
Identities = 88/89 (98%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttccacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>37553_dya-mir-316-1:mirbase
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>37554_dya-mir-316-2:mirbase
Length = 89
Score = 161 bits (81), Expect = 1e-40
Identities = 87/89 (97%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>36227_der-mir-316:mirbase
Length = 89
Score = 153 bits (77), Expect = 2e-38
Identities = 86/89 (96%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
||||||||||||||||| |||||||||||
Sbjct: 61 agggaaaaaggcgtattcactatgagttt 89
>36145_dan-mir-316:mirbase
Length = 89
Score = 139 bits (70), Expect = 4e-34
Identities = 87/90 (96%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcaattcca-caacgacagga 59
|||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgttt-aattcaaacaacgacagga 59
Query: 60 aagggaaaaaggcgtatttactatgagttt 89
||||||||||||||||||||||||||||||
Sbjct: 60 aagggaaaaaggcgtatttactatgagttt 89
>36891_dpe-mir-316:mirbase
Length = 89
Score = 131 bits (66), Expect = 9e-32
Identities = 86/90 (95%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcaattcca-caacgacagga 59
|||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttta-ttcgatcaacgacagga 59
Query: 60 aagggaaaaaggcgtatttactatgagttt 89
||||||||||||||||||||||||||||||
Sbjct: 60 aagggaaaaaggcgtatttactatgagttt 89
>36975_dps-mir-316:mirbase
Length = 89
Score = 131 bits (66), Expect = 9e-32
Identities = 86/90 (95%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcaattcca-caacgacagga 59
|||||||||||||||||||||||||||||||||||||||| | ||| | |||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgtttta-ttcgatcaacgacagga 59
Query: 60 aagggaaaaaggcgtatttactatgagttt 89
||||||||||||||||||||||||||||||
Sbjct: 60 aagggaaaaaggcgtatttactatgagttt 89
>37472_dwi-mir-316:mirbase
Length = 89
Score = 129 bits (65), Expect = 4e-31
Identities = 83/89 (93%)
Strand = Plus / Plus
Query: 1 aaattctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaa 60
|||||||||||||||||||||||||||||||||||||||| | || |||||||||||
Sbjct: 1 aaattctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaa 60
Query: 61 agggaaaaaggcgtatttactatgagttt 89
|||||||||||||||||||||||||||||
Sbjct: 61 agggaaaaaggcgtatttactatgagttt 89
>36310_dgr-mir-316:mirbase
Length = 87
Score = 115 bits (58), Expect = 5e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaaagg 63
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 3 ttctagtcgatttgtctttttccgcttactggcgttt-tattgagcaacgacaggaaagg 61
Query: 64 gaaaaaggcgtatttactatga 85
||||||||||||||||||||||
Sbjct: 62 gaaaaaggcgtatttactatga 83
>37395_dvi-mir-316:mirbase
Length = 88
Score = 115 bits (58), Expect = 5e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaaagg 63
||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgttt-tattgagcaacgacaggaaagg 62
Query: 64 gaaaaaggcgtatttactatga 85
||||||||||||||||||||||
Sbjct: 63 gaaaaaggcgtatttactatga 84
>36816_dmo-mir-316:mirbase
Length = 87
Score = 99.6 bits (50), Expect = 3e-22
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaaagg 63
||||||||||||||||||||||||||||||| ||||| ||| |||||| |||| ||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactgacgttt-tattgaacaacggcagggaagg 62
Query: 64 gaaaaaggcgtatttactatga 85
||||||||||||||||||||||
Sbjct: 63 gaaaaaggcgtatttactatga 84
>35226_aae-mir-316:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 gatttgtctttttccgcttactg 34
|||||||||||||||||||||||
Sbjct: 15 gatttgtctttttccgcttactg 37
>36046_cqu-mir-316:mirbase
Length = 139
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 gatttgtctttttccgcttactg 34
|||||||||||||||||||||||
Sbjct: 32 gatttgtctttttccgcttactg 54
