miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00720;mir-317;AAEU02000013.1/76417-76507 7245:Drosophila yakuba
Length = 91
Score = 178 bits (90), Expect = 8e-45
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaac 60
Query: 61 acagctggtggtatccagtggccgtttggc 90
||||||||||||||||||||||||||||||
Sbjct: 61 acagctggtggtatccagtggccgtttggc 90
>RF00720;mir-317;AAIZ01005964.1/1594-1504 7234:Drosophila
persimilis
Length = 91
Score = 121 bits (61), Expect = 2e-27
Identities = 79/85 (92%)
Strand = Plus / Plus
Query: 2 tgcaactgccattgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaaca 61
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 2 tgcaactgccgttgggatacaccctgtgctcgctttgaatatggtgcaagcaagtgaaca 61
Query: 62 cagctggtggtatccagtggccgtt 86
|||||||||||||||| ||||||||
Sbjct: 62 cagctggtggtatccaatggccgtt 86
>RF00720;mir-317;AANI01014607.1/383695-383607 7244:Drosophila
virilis
Length = 89
Score = 107 bits (54), Expect = 2e-23
Identities = 69/73 (94%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgaattg--tgcaagcaagtgaacacagctggtggta 71
Query: 74 tccagtggccgtt 86
|||||||||||||
Sbjct: 72 tccagtggccgtt 84
>RF00720;mir-317;AAPT01018372.1/102669-102760 7222:Drosophila
grimshawi
Length = 92
Score = 95.6 bits (48), Expect = 9e-20
Identities = 63/68 (92%)
Strand = Plus / Plus
Query: 23 ccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtatccagtggc 82
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 24 ccctgtgctcgctttgaatattgtgtaagcaagtgaacacagctggtggtatccagtggc 83
Query: 83 cgtttggc 90
||||||||
Sbjct: 84 cgtttggc 91
>RF00720;mir-317;AAPU01011031.1/18314-18226 7230:Drosophila
mojavensis
Length = 89
Score = 65.9 bits (33), Expect = 8e-11
Identities = 65/73 (89%), Gaps = 2/73 (2%)
Strand = Plus / Plus
Query: 14 tgggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggta 73
|||||||||||||||||||||||||| | | || |||||||||||||||||||||||
Sbjct: 14 tgggatacaccctgtgctcgctttgagttta-tgtt-gcaagtgaacacagctggtggta 71
Query: 74 tccagtggccgtt 86
||||| |||||||
Sbjct: 72 tccagaggccgtt 84
>RF00720;mir-317;AAGE02012640.1/88438-88525 7159:Aedes aegypti
(yellow fever mosquito)
Length = 88
Score = 50.1 bits (25), Expect = 5e-06
Identities = 60/70 (85%), Gaps = 5/70 (7%)
Strand = Plus / Plus
Query: 15 gggatacaccctgtgctcgctttgaatgaaatgcaagcaagtgaacacagctggtggtat 74
|||||||||||||||||||||||| || | || | |||||||||||||||||||||
Sbjct: 15 gggatacaccctgtgctcgctttgcat----tcgaaactagtgaacacagctggtggtat 70
Query: 75 c-cagtggcc 83
| ||||||||
Sbjct: 71 ctcagtggcc 80
>RF00720;mir-317;AAZO01004205.1/873-973 121224:Pediculus humanus
corporis (human body louse)
Length = 101
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 aagtgaacacagctggtggtatc 75
|||||||||||||||||||||||
Sbjct: 62 aagtgaacacagctggtggtatc 84
>RF00720;mir-317;ABLF01040770.1/5816-5924 7029:Acyrthosiphon pisum
(pea aphid)
Length = 109
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 agtgaacacagctggtggtatc 75
||||||||||||||||||||||
Sbjct: 71 agtgaacacagctggtggtatc 92
>RF00720;mir-317;AADK01000441.1/12625-12537 7091:Bombyx mori
(domestic silkworm)
Length = 89
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 agtgaacacagctggtggtatc 75
||||||||||||||||||||||
Sbjct: 51 agtgaacacagctggtggtatc 72
>RF00720;mir-317;AAJJ01000475.1/38254-38168 7070:Tribolium
castaneum (red flour beetle)
Length = 87
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 agtgaacacagctggtggtatc 75
||||||||||||||||||||||
Sbjct: 49 agtgaacacagctggtggtatc 70
