miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00818;mir-318;AAGH01004927.1/3240-3173 7240:Drosophila simulans
Length = 68
Score = 127 bits (64), Expect = 2e-29
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacactttaagcatcactgggctttgtttat 60
Query: 61 ctcatgag 68
||||||||
Sbjct: 61 ctcatgag 68
>RF00818;mir-318;AAPU01010980.1/46750-46818 7230:Drosophila
mojavensis
Length = 69
Score = 75.8 bits (38), Expect = 6e-14
Identities = 60/66 (90%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacacttc-aagcatcactgggctttgttta 59
|||||||||||||| ||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 1 tttatgggatacactaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
Query: 60 tctcat 65
||||||
Sbjct: 61 tctcat 66
>RF00818;mir-318;AAQB01008948.1/667-736 7260:Drosophila willistoni
Length = 70
Score = 71.9 bits (36), Expect = 9e-13
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 1 tttatgggatacacacagttcagttttgtcacacttca--agcatcactgggctttgttt 58
|||||||||||||| |||||||||||||| || | || ||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcgcattccacgagcatcactgggctttgttt 60
Query: 59 atctcat 65
|||||||
Sbjct: 61 atctcat 67
>RF00818;mir-318;AAPP01019505.1/87887-87819 7217:Drosophila
ananassae
Length = 69
Score = 67.9 bits (34), Expect = 1e-11
Identities = 56/62 (90%), Gaps = 1/62 (1%)
Strand = Plus / Plus
Query: 5 tgggatacacacagttcagttttgtcacactt-caagcatcactgggctttgtttatctc 63
|||||||||||| |||||||| |||||| || | |||||||||||||||||||||||||
Sbjct: 5 tgggatacacacggttcagttgtgtcacttttgcgagcatcactgggctttgtttatctc 64
Query: 64 at 65
||
Sbjct: 65 at 66
