miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00143;mir-6;AANI01017110.1/28671-28745 7244:Drosophila virilis
Length = 75
Score = 109 bits (55), Expect = 6e-24
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 8 ttatctaaggaaatagtagccgtgattttacccaagaatttttcacatatcacagttgct 67
||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||
Sbjct: 1 ttatctaaggaaatagtagccgtgattttacattagaagctttcacatatcacagttgct 60
Query: 68 gtttcttttagatag 82
|||||||||||||||
Sbjct: 61 gtttcttttagatag 75
>RF00143;mir-6;AAPP01019505.1/88061-87986 7217:Drosophila
ananassae
Length = 76
Score = 95.6 bits (48), Expect = 9e-20
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 8 ttatctaaggaaatagtagccgtgattttacccaagaa-tttttcacatatcacagttgc 66
||||||||||||||||||||||||||||||||| ||| | ||| ||||||||||||||
Sbjct: 1 ttatctaaggaaatagtagccgtgattttaccctcgaagtcattcccatatcacagttgc 60
Query: 67 tgtttcttttagatag 82
||||||||||||||||
Sbjct: 61 tgtttcttttagatag 76
>RF00143;mir-6;AAPU01010980.1/46598-46672 7230:Drosophila
mojavensis
Length = 75
Score = 77.8 bits (39), Expect = 2e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 8 ttatctaaggaaatagtagccgtgattttacccaagaatttttcacatatcacagttgct 67
||||||||||||||||||||||||||||||| || | | ||||||||||||||||
Sbjct: 1 ttatctaaggaaatagtagccgtgattttacatttcaacctattacatatcacagttgct 60
Query: 68 gtttcttttagatag 82
|||||||||||||||
Sbjct: 61 gtttcttttagatag 75
>RF00143;mir-6;AAQB01008948.1/516-592 7260:Drosophila willistoni
Length = 77
Score = 75.8 bits (38), Expect = 9e-14
Identities = 68/77 (88%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 8 ttatctaaggaaatagtagccgtgattttacccaag--aatttttcacatatcacagttg 65
|||||||||||||||||||||||||||||| | ||| ||| ||||||||||||||
Sbjct: 1 ttatctaaggaaatagtagccgtgattttaattattcaaatctttgacatatcacagttg 60
Query: 66 ctgtttcttttagatag 82
|||||||||||||||||
Sbjct: 61 ctgtttcttttagatag 77
