miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01996;mir-995;AASS01029797.1/1529-1618 7240:Drosophila simulans
Length = 90
Score = 133 bits (67), Expect = 4e-31
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 1 cacctgcaccccgcagcccgaattatgtgggagctgcgccgtttccgtaatccgtagcac 60
|||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 1 cacctgtaccccgcagcccgaattatgtgggagctgcgccgtttccaaagtccgtagcac 60
Query: 61 cacatgattcggcttcgtggtacagga 87
||||||||||||||||||||| |||||
Sbjct: 61 cacatgattcggcttcgtggtgcagga 87
>RF01996;mir-995;AAPP01019564.1/136354-136265 7217:Drosophila
ananassae
Length = 90
Score = 77.8 bits (39), Expect = 2e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 12 cgcagcccgaattatgtgggagctgcgccgtttccgtaatccgtagcaccacatgattcg 71
||||||||| ||| |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 12 cgcagcccggattctgtgggagctgcgccgttctttctatccgtagcaccacatgattcg 71
Query: 72 gcttcgtggtacagg 86
|||||||||| ||||
Sbjct: 72 gcttcgtggtgcagg 86
>RF01996;mir-995;AAPT01018750.1/3883-3988 7222:Drosophila
grimshawi
Length = 106
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 53 cgtagcaccacatgattcggcttcgtggt 81
|||||||||||||||||||||||||||||
Sbjct: 68 cgtagcaccacatgattcggcttcgtggt 96
>RF01996;mir-995;AANI01017183.1/395-306 7244:Drosophila virilis
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 53 cgtagcaccacatgattcggcttcgtggt 81
|||||||||||||||||||||||||||||
Sbjct: 52 cgtagcaccacatgattcggcttcgtggt 80
>RF01996;mir-995;AAIZ01006001.1/48783-48873 7234:Drosophila
persimilis
Length = 91
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 52 ccgtagcaccacatgattcggcttcgtggt 81
||||||||||||||||||||||| ||||||
Sbjct: 54 ccgtagcaccacatgattcggctgcgtggt 83
>RF01996;mir-995;AAPU01011147.1/810709-810797 7230:Drosophila
mojavensis
Length = 89
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 53 cgtagcaccacatgattcggcttcgtggtacagg 86
||||||||||||||||||||||| || |||||||
Sbjct: 51 cgtagcaccacatgattcggcttggtagtacagg 84
>RF01996;mir-995;AAQB01008976.1/639591-639498 7260:Drosophila
willistoni
Length = 94
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 53 cgtagcaccacatgattcggcttcgtggt 81
|||||||||||||||||||||||| ||||
Sbjct: 57 cgtagcaccacatgattcggcttcatggt 85
