miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00948;mir-996;AANI01014375.1/48816-48912 7244:Drosophila
virilis
Length = 97
Score = 182 bits (92), Expect = 6e-46
Identities = 95/96 (98%)
Strand = Plus / Plus
Query: 1 tctgactctattttgtcggcgaacatggatctagtgcacggtggttcatgattaagttcg 60
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1 tctgactctattttgtcggcgaacatggatctagtgcacggttgttcatgattaagttcg 60
Query: 61 tgactagatttcatgctcgtctattaagttgggtca 96
||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgactagatttcatgctcgtctattaagttgggtca 96
>RF00948;mir-996;AAWU01001985.1/4335-4234 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 102
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 57 ttcgtgactagatttcatgctcgtctattaagttggg 93
|||||||||||||| ||||||||||||| ||||||||
Sbjct: 62 ttcgtgactagattacatgctcgtctatgaagttggg 98
>RF00948;mir-996;AAGE02017556.1/112272-112170 7159:Aedes aegypti
(yellow fever mosquito)
Length = 103
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 57 ttcgtgactagatttcatgctcgtctattaagttg 91
|||||||||||||| ||||||||||||| ||||||
Sbjct: 63 ttcgtgactagattacatgctcgtctatgaagttg 97
>RF00948;mir-996;AAAB01008898.1/1736227-1736132 180454:Anopheles
gambiae str. PEST
Length = 96
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 57 ttcgtgactagatttcatgctcgtctat 84
|||||||||||||| |||||||||||||
Sbjct: 56 ttcgtgactagattacatgctcgtctat 83
