miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00948;mir-996;AANI01014375.1/48816-48912 7244:Drosophila
          virilis
          Length = 97

 Score =  182 bits (92), Expect = 6e-46
 Identities = 95/96 (98%)
 Strand = Plus / Plus

                                                                      
Query: 1  tctgactctattttgtcggcgaacatggatctagtgcacggtggttcatgattaagttcg 60
          |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 1  tctgactctattttgtcggcgaacatggatctagtgcacggttgttcatgattaagttcg 60

                                              
Query: 61 tgactagatttcatgctcgtctattaagttgggtca 96
          ||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgactagatttcatgctcgtctattaagttgggtca 96




>RF00948;mir-996;AAWU01001985.1/4335-4234 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 102

 Score = 58.0 bits (29), Expect = 2e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                               
Query: 57 ttcgtgactagatttcatgctcgtctattaagttggg 93
          |||||||||||||| ||||||||||||| ||||||||
Sbjct: 62 ttcgtgactagattacatgctcgtctatgaagttggg 98




>RF00948;mir-996;AAGE02017556.1/112272-112170 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 103

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                             
Query: 57 ttcgtgactagatttcatgctcgtctattaagttg 91
          |||||||||||||| ||||||||||||| ||||||
Sbjct: 63 ttcgtgactagattacatgctcgtctatgaagttg 97




>RF00948;mir-996;AAAB01008898.1/1736227-1736132 180454:Anopheles
          gambiae str. PEST
          Length = 96

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 57 ttcgtgactagatttcatgctcgtctat 84
          |||||||||||||| |||||||||||||
Sbjct: 56 ttcgtgactagattacatgctcgtctat 83