miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01943;mir-999;AABU01002774.1/14048066-14047946 7227:Drosophila
melanogaster (fruit fly)
Length = 121
Score = 208 bits (105), Expect = 1e-53
Identities = 105/105 (100%)
Strand = Plus / Plus
Query: 1 aaggatgccgctcaattaccccgacatagtcatacggtgaatgttgtgtattggagacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 aaggatgccgctcaattaccccgacatagtcatacggtgaatgttgtgtattggagacca 68
Query: 61 atgttaactgtaagactgtgtctcggtggttgccagcccagccac 105
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 atgttaactgtaagactgtgtctcggtggttgccagcccagccac 113
>RF01943;mir-999;AAPP01019541.1/123679-123560 7217:Drosophila
ananassae
Length = 120
Score = 168 bits (85), Expect = 9e-42
Identities = 94/97 (96%)
Strand = Plus / Plus
Query: 1 aaggatgccgctcaattaccccgacatagtcatacggtgaatgttgtgtattggagacca 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||
Sbjct: 9 aaggatgccgctcaattaccccgacatagtcgtacggtgaatgttgtgtattggaaagca 68
Query: 61 atgttaactgtaagactgtgtctcggtggttgccagc 97
|||||||||||||||||||||||||||||||||||||
Sbjct: 69 atgttaactgtaagactgtgtctcggtggttgccagc 105
>RF01943;mir-999;AAFS01003957.1/6353-6235 46245:Drosophila
pseudoobscura pseudoobscura
Length = 119
Score = 127 bits (64), Expect = 3e-29
Identities = 85/91 (93%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 8 ccgctcaattaccccgacatagtcatacggtgaatgttgtgtattggagaccaatgttaa 67
||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct: 17 ccgctcaattaccatgacatagtcgtacggtgaatgttgtgtattgga--ccaatgttaa 74
Query: 68 ctgtaagactgtgtctcggtggttgccagcc 98
||||||||||||||||||||||||| |||||
Sbjct: 75 ctgtaagactgtgtctcggtggttgtcagcc 105
>RF01943;mir-999;AAQB01009428.1/36409-36290 7260:Drosophila
willistoni
Length = 120
Score = 125 bits (63), Expect = 1e-28
Identities = 85/91 (93%), Gaps = 1/91 (1%)
Strand = Plus / Plus
Query: 8 ccgctcaattaccccgacatagtcatacggtgaatgttgtgtattggagaccaatgttaa 67
||||||||||||| ||||||||| ||||||||||||||| ||| |||| ||||||||||
Sbjct: 16 ccgctcaattaccatgacatagtcgtacggtgaatgttgtttat-ggagtccaatgttaa 74
Query: 68 ctgtaagactgtgtctcggtggttgccagcc 98
|||||||||||||||||||||||||||||||
Sbjct: 75 ctgtaagactgtgtctcggtggttgccagcc 105
>RF01943;mir-999;AAPT01019304.1/332529-332410 7222:Drosophila
grimshawi
Length = 120
Score = 123 bits (62), Expect = 5e-28
Identities = 84/90 (93%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 9 cgctcaattaccccgacatagtcatacggtgaatgttgtgtattggagaccaatgttaac 68
|||||||||||| ||||||||| ||||||||||||||||| |||||| |||||||||||
Sbjct: 17 cgctcaattaccatgacatagtcgtacggtgaatgttgtgt-ttggagtccaatgttaac 75
Query: 69 tgtaagactgtgtctcggtggttgccagcc 98
||||||||||||||| ||||||||||||||
Sbjct: 76 tgtaagactgtgtcttggtggttgccagcc 105
>RF01943;mir-999;AAPU01011060.1/218967-218849 7230:Drosophila
mojavensis
Length = 119
Score = 117 bits (59), Expect = 3e-26
Identities = 81/87 (93%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 7 gccgctcaattaccccgacatagtcatacggtgaatgttgtgtattggagaccaatgtta 66
|||||||||||||| ||||||||| ||||||||||||||| ||| |||| |||||||||
Sbjct: 15 gccgctcaattaccgtgacatagtcgtacggtgaatgttgtttat-ggagtccaatgtta 73
Query: 67 actgtaagactgtgtctcggtggttgc 93
|||||||||||||||||||||||||||
Sbjct: 74 actgtaagactgtgtctcggtggttgc 100
>RF01943;mir-999;AASS01029274.1/1756-1642 7240:Drosophila simulans
Length = 115
Score = 101 bits (51), Expect = 2e-21
Identities = 94/102 (92%), Gaps = 6/102 (5%)
Strand = Plus / Plus
Query: 4 gatgccgctcaattaccccgacatagtcatacggtgaatgttgtgtattggagaccaatg 63
||||||||||||| |||||||||||| |||||||| |||| ||||||| |||||||||
Sbjct: 12 gatgccgctcaata--cccgacatagtcgtacggtga-tgtt-tgtattg-agaccaatg 66
Query: 64 ttaactgtaagactgtgtctcggtggttgccagcccagccac 105
|||||||||||||||||||||||||| |||||||||||||||
Sbjct: 67 ttaactgtaagactgtgtctcggtgg-tgccagcccagccac 107
>RF01943;mir-999;AAWU01001445.1/28151-28270 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 120
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 aatgttaactgtaagactgtgtct 83
||||||||||||||||||||||||
Sbjct: 69 aatgttaactgtaagactgtgtct 92
>RF01943;mir-999;AAGE02006027.1/163141-163260 7159:Aedes aegypti
(yellow fever mosquito)
Length = 120
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 aatgttaactgtaagactgtgtct 83
||||||||||||||||||||||||
Sbjct: 69 aatgttaactgtaagactgtgtct 92
>RF01943;mir-999;ABKQ02022076.1/15069-14951 377270:Anopheles
gambiae S
Length = 119
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 aatgttaactgtaagactgtgtct 83
||||||||||||||||||||||||
Sbjct: 69 aatgttaactgtaagactgtgtct 92
