miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AAAA02031697.1/13340-13228 39946:Oryza sativa
Indica Group
Length = 113
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 atactctctctgtcccaaaatata 35
||||||||||||||||||||||||
Sbjct: 4 atactctctctgtcccaaaatata 27
>RF00906;MIR1122;AP008207.1/29270032-29270129 39947:Oryza sativa
Japonica Group
Length = 98
Score = 48.1 bits (24), Expect = 5e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 tactctctctgtcccaaaatataa 36
||||||||||||||||||||||||
Sbjct: 5 tactctctctgtcccaaaatataa 28
>RF00906;MIR1122;AP004127.1/135866-135970 39947:Oryza sativa
Japonica Group
Length = 105
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 tatattttgggacagatggagta 184
|||||||||||||||||||||||
Sbjct: 79 tatattttgggacagatggagta 101
>RF00906;MIR1122;AAAA02032049.1/7937-7781 39946:Oryza sativa
Indica Group
Length = 157
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 taatactctctctgtcccaaaatataa 36
|||||||||||||||||| ||||||||
Sbjct: 2 taatactctctctgtccctaaatataa 28
>RF00906;MIR1122;AP008209.1/27314174-27314047 39947:Oryza sativa
Japonica Group
Length = 128
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 162 tatattttgggacagatggagtagatt 188
||||||||||||| |||||||||||||
Sbjct: 102 tatattttgggacggatggagtagatt 128
>RF00906;MIR1122;AAAA02021060.1/7083-7179 39946:Oryza sativa Indica
Group
Length = 97
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 160 actatattttgggacagatggagtag 185
|||||||||| |||||||||||||||
Sbjct: 29 actatattttaggacagatggagtag 4
>RF00906;MIR1122;AP008216.1/3083672-3083805 39947:Oryza sativa
Japonica Group
Length = 134
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 aatactctctctgtcccaaaatataa 36
|||||||||||||||||| |||||||
Sbjct: 3 aatactctctctgtcccataatataa 28
>RF00906;MIR1122;AL845344.4/40945-41080 4530:Oryza sativa (rice)
Length = 136
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 162 tatattttgggacagatggagtagat 187
|||||||||||||||| |||||||||
Sbjct: 27 tatattttgggacagagggagtagat 2
