miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AC079357.3/127350-127255 39947:Oryza sativa
Japonica Group
Length = 96
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 atactatctccgtcccaaaatatagt 31
||||||||||||||||||||||||||
Sbjct: 4 atactatctccgtcccaaaatatagt 29
>RF00906;MIR1122;AAAA02032340.1/20991-20868 39946:Oryza sativa
Indica Group
Length = 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tactatctccgtcccaaaatatag 30
||||||||||||||||||||||||
Sbjct: 5 tactatctccgtcccaaaatatag 28
>RF00906;MIR1122;AAAA02024386.1/33092-33187 39946:Oryza sativa
Indica Group
Length = 96
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 tactatctccgtcccaaaatatag 30
||||||||||||||||||||||||
Sbjct: 5 tactatctccgtcccaaaatatag 28
>RF00906;MIR1122;AACV01017910.1/30212-30123 39947:Oryza sativa
Japonica Group
Length = 90
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 7 tactatctccgtcccaaaatatag 30
||||||||||||||||||||||||
Sbjct: 86 tactatctccgtcccaaaatatag 63
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 ctatctccgtcccaaaatatag 30
||||||||||||||||||||||
Sbjct: 7 ctatctccgtcccaaaatatag 28
>RF00906;MIR1122;AC217198.1/129397-129553 4537:Oryza punctata
Length = 157
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 3 aacatactatctccgtcccaaaatata 29
|||||||| ||||||||||||||||||
Sbjct: 1 aacatactctctccgtcccaaaatata 27
>RF00906;MIR1122;AP008217.1/24769050-24768917 39947:Oryza sativa
Japonica Group
Length = 134
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 acatactatctccgtcccaaaatata 29
||||||| ||||||||||||||||||
Sbjct: 2 acatactttctccgtcccaaaatata 27
>RF00906;MIR1122;AACV01005190.1/14557-14668 39947:Oryza sativa
Japonica Group
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 6 atactatctccgtcccaaaatatagt 31
|||||| |||||||||||||||||||
Sbjct: 4 atactacctccgtcccaaaatatagt 29
>RF00906;MIR1122;AC136219.2/91733-91617 39947:Oryza sativa
Japonica Group
Length = 117
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 4 acatactatctccgtcccaaaatata 29
||||||| ||||||||||||||||||
Sbjct: 2 acatactctctccgtcccaaaatata 27
>RF00906;MIR1122;BX000499.1/44774-44875 4530:Oryza sativa (rice)
Length = 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 5 catactatctccgtcccaaaatatag 30
|||||| |||||||||||||||||||
Sbjct: 3 catactctctccgtcccaaaatatag 28
