miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;EU944277.1/110-337 4577:Zea mays
Length = 228
Score = 291 bits (147), Expect = 3e-78
Identities = 201/228 (88%)
Strand = Plus / Plus
Query: 18 caccacgagttggtgaagctgccagcatgatctggttctgatggtggtggtatatgtaag 77
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caccacgagttggtgaagctgccagcatgatctggttctgatggtggtggtatatgtaag 60
Query: 78 atggatgtaatctatactacggcccctgttaattnnnnnnnnnnnncccggtccctgact 137
|||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 61 atggatgtaatctatactacggcccctgttaatttctctctctctccccggtccctgact 120
Query: 138 gtcatatatggatcgacgaatccaagatgagaggggaatgnnnnnnnnnnnnnnnggtaa 197
|||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 121 gtcatatatggatcgacgaatccaagatgagaggggaatggagagagagagagagggtaa 180
Query: 198 ttatgagcaccaggaccaggtcatgctgtagtttcatctgctggtggc 245
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttatgagcaccaggaccaggtcatgctgtagtttcatctgctggtggc 228
>RF00640;MIR167_1;BT062276.1/99-327 4577:Zea mays
Length = 229
Score = 186 bits (94), Expect = 1e-46
Identities = 195/233 (83%), Gaps = 9/233 (3%)
Strand = Plus / Plus
Query: 18 caccacgagttggtgaagctgccagcatgatctggttctgatggtggtggtatatgtaag 77
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 caccacgagttggtgaagctgccagcatgatctggttatgatggtggtggtatatgtaag 60
Query: 78 atggatgtaatctatacta----cggcccctgttaattnnnnnnnnnnnncccggtccct 133
||||||||||||||||||| |||||||||| | | ||| ||||||
Sbjct: 61 atggatgtaatctatactactaccggcccctgtcact--ctctctctctcccccgtccct 118
Query: 134 gactgtcatatatggatcgacgaatccaagatgagaggggaatgnnnnnnnnnnnnnnng 193
|||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 119 gactgtcatatatggatcgacgaatccaagatgagaggggaagg--gagagagagagagg 176
Query: 194 gtaatt-atgagcaccaggaccaggtcatgctgtagtttcatctgctggtggc 245
|||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 gtaattaatgagcaccaggaccaggtcatgctgtagtttcatctgctggtggc 229
>RF00640;MIR167_1;ABXC01005647.1/68869-69033 4558:Sorghum bicolor
(sorghum)
Length = 165
Score = 60.0 bits (30), Expect = 2e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 18 caccacgagttggtgaagctgccagcatgatctg 51
|||||| |||||||||||||||||||||||||||
Sbjct: 1 caccacaagttggtgaagctgccagcatgatctg 34
Score = 54.0 bits (27), Expect = 1e-06
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 214 caggtcatgctgtagtttcatctgctggtgg 244
|||||||||||||||||||||| ||||||||
Sbjct: 134 caggtcatgctgtagtttcatccgctggtgg 164
>RF00640;MIR167_1;CT828788.1/88-212 39946:Oryza sativa Indica
Group
Length = 125
Score = 60.0 bits (30), Expect = 2e-08
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 18 caccacgagttggtgaagctgccagcatgatctg 51
|||||| |||||||||||||||||||||||||||
Sbjct: 1 caccacaagttggtgaagctgccagcatgatctg 34
Score = 58.0 bits (29), Expect = 7e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 214 caggtcatgctgtagtttcatctgctggt 242
|||||||||||||||||||||||||||||
Sbjct: 94 caggtcatgctgtagtttcatctgctggt 122
>RF00640;MIR167_1;AACV01003428.1/8526-8249 39947:Oryza sativa
Japonica Group
Length = 278
Score = 48.1 bits (24), Expect = 6e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctggtt 54
||||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggtt 37
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctggt 53
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctggt 53
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctggt 53
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctggt 53
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctggt 53
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
(castor bean)
Length = 343
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctggt 53
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctggt 53
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctggt 53
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctggt 53
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctggt 53
|||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctggt 36
>RF00640;MIR167_1;AC210447.1/128234-128320 4538:Oryza glaberrima
(African rice)
Length = 87
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 29 ggtgaagctgccagcatgatctg 51
|||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AARH01033933.1/298-187 3694:Populus trichocarpa
Length = 112
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 ggtgaagctgccagcatgatct 50
||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;AARH01008931.1/3492-3395 3694:Populus
trichocarpa
Length = 98
Score = 44.1 bits (22), Expect = 0.001
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 18 caccacgagttggtgaagctgccagcatgatctg 51
|||||| ||| | |||||||||||||||||||||
Sbjct: 1 caccactagtagttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AASG02001065.1/6152-6064 3988:Ricinus communis
(castor bean)
Length = 89
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctgg 52
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;AASG02000565.1/57130-57272 3988:Ricinus communis
(castor bean)
Length = 143
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 29 ggtgaagctgccagcatgatct 50
||||||||||||||||||||||
Sbjct: 12 ggtgaagctgccagcatgatct 33
>RF00640;MIR167_1;EU952646.1/178-293 4577:Zea mays
Length = 116
Score = 44.1 bits (22), Expect = 0.001
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 31 tgaagctgccagcatgatctgg 52
||||||||||||||||||||||
Sbjct: 14 tgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;AL928781.4/79791-79930 4530:Oryza sativa (rice)
Length = 140
Score = 44.1 bits (22), Expect = 0.001
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 30 gtgaagctgccagcatgatctggttctgat 59
||||||||||||||||||||| | ||||||
Sbjct: 13 gtgaagctgccagcatgatctagctctgat 42
>RF00640;MIR167_1;AY551235.1/11-128 4530:Oryza sativa (rice)
Length = 118
Score = 44.1 bits (22), Expect = 0.001
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 18 caccacgagttggtgaagctgccagcatgatctg 51
|||||| ||| | |||||||||||||||||||||
Sbjct: 1 caccacaagtggatgaagctgccagcatgatctg 34
