miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


>55084_zma-miR396m:pmrd
          Length = 227

 Score =  313 bits (158), Expect = 3e-86
 Identities = 158/158 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  gacggaatgattggctcctcccagtcccagtcccagtcccacccaccaattctcttcccc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  gacggaatgattggctcctcccagtcccagtcccagtcccacccaccaattctcttcccc 129

                                                                       
Query: 140 ccgaccggccgtgaattgaattgaatcgaatcgcatcgctgagcttccccccggctcgct 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ccgaccggccgtgaattgaattgaatcgaatcgcatcgctgagcttccccccggctcgct 189

                                                 
Query: 200 cacgcgacctgttgatggttcaagaaagcccatggaaa 237
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cacgcgacctgttgatggttcaagaaagcccatggaaa 227



 Score = 60.0 bits (30), Expect = 8e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 11 tttccacaggctttcttgaactgtgaactc 40
          ||||||||||||||||||||||||||||||
Sbjct: 1  tttccacaggctttcttgaactgtgaactc 30




>48951_osa-miR396e:pmrd
          Length = 184

 Score = 79.8 bits (40), Expect = 9e-16
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                  
Query: 1  gcgggcatgctttccacaggctttcttgaactgtgaactc 40
          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcgggcatgctttccacaggctttcttgaactgtgaactc 40



 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 206 acctgttgatggttcaagaaagcccatggaaaccatgc 243
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 144 acctgttgatggttcaagaaagcccatggaaaccatgc 181




>48950_osa-miR396e:pmrd
          Length = 184

 Score = 79.8 bits (40), Expect = 9e-16
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                  
Query: 1  gcgggcatgctttccacaggctttcttgaactgtgaactc 40
          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcgggcatgctttccacaggctttcttgaactgtgaactc 40



 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 206 acctgttgatggttcaagaaagcccatggaaaccatgc 243
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 144 acctgttgatggttcaagaaagcccatggaaaccatgc 181




>48949_osa-miR396e:pmrd
          Length = 184

 Score = 79.8 bits (40), Expect = 9e-16
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                  
Query: 1  gcgggcatgctttccacaggctttcttgaactgtgaactc 40
          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcgggcatgctttccacaggctttcttgaactgtgaactc 40



 Score = 75.8 bits (38), Expect = 1e-14
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 206 acctgttgatggttcaagaaagcccatggaaaccatgc 243
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 144 acctgttgatggttcaagaaagcccatggaaaccatgc 181




>48948_osa-miR396d:pmrd
          Length = 142

 Score = 79.8 bits (40), Expect = 9e-16
 Identities = 40/40 (100%)
 Strand = Plus / Plus

                                                  
Query: 1  gcgggcatgctttccacaggctttcttgaactgtgaactc 40
          ||||||||||||||||||||||||||||||||||||||||
Sbjct: 9  gcgggcatgctttccacaggctttcttgaactgtgaactc 48




>54488_sbi-miR396e:pmrd
          Length = 189

 Score = 65.9 bits (33), Expect = 1e-11
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 206 acctgttgatggttcaagaaagcccatggaaac 238
           |||||||||||||||||||||||||||||||||
Sbjct: 157 acctgttgatggttcaagaaagcccatggaaac 189



 Score = 60.0 bits (30), Expect = 8e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 11 tttccacaggctttcttgaactgtgaactc 40
          ||||||||||||||||||||||||||||||
Sbjct: 1  tttccacaggctttcttgaactgtgaactc 30




>55085_zma-miR396n:pmrd
          Length = 186

 Score = 63.9 bits (32), Expect = 5e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 206 acctgttgatggttcaagaaagcccatggaaa 237
           ||||||||||||||||||||||||||||||||
Sbjct: 155 acctgttgatggttcaagaaagcccatggaaa 186



 Score = 60.0 bits (30), Expect = 8e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 11 tttccacaggctttcttgaactgtgaactc 40
          ||||||||||||||||||||||||||||||
Sbjct: 1  tttccacaggctttcttgaactgtgaactc 30




>55076_zma-miR396e:pmrd
          Length = 186

 Score = 63.9 bits (32), Expect = 5e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 206 acctgttgatggttcaagaaagcccatggaaa 237
           ||||||||||||||||||||||||||||||||
Sbjct: 155 acctgttgatggttcaagaaagcccatggaaa 186



 Score = 60.0 bits (30), Expect = 8e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 11 tttccacaggctttcttgaactgtgaactc 40
          ||||||||||||||||||||||||||||||
Sbjct: 1  tttccacaggctttcttgaactgtgaactc 30




>55075_zma-miR396d:pmrd
          Length = 186

 Score = 63.9 bits (32), Expect = 5e-11
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 206 acctgttgatggttcaagaaagcccatggaaa 237
           ||||||||||||||||||||||||||||||||
Sbjct: 155 acctgttgatggttcaagaaagcccatggaaa 186



 Score = 60.0 bits (30), Expect = 8e-10
 Identities = 30/30 (100%)
 Strand = Plus / Plus

                                        
Query: 11 tttccacaggctttcttgaactgtgaactc 40
          ||||||||||||||||||||||||||||||
Sbjct: 1  tttccacaggctttcttgaactgtgaactc 30




>48480_far-miR396:pmrd
          Length = 99

 Score = 63.9 bits (32), Expect = 5e-11
 Identities = 38/40 (95%)
 Strand = Plus / Plus

                                                  
Query: 1  gcgggcatgctttccacaggctttcttgaactgtgaactc 40
          |||| |||||| ||||||||||||||||||||||||||||
Sbjct: 6  gcggccatgctctccacaggctttcttgaactgtgaactc 45




>48954_osa-miR396f:pmrd
          Length = 176

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 6  catgctttccacaggctttcttgaactgtgaactc 40
          |||||| ||||||||||||||||||||||||||||
Sbjct: 3  catgctctccacaggctttcttgaactgtgaactc 37




>48953_osa-miR396f:pmrd
          Length = 176

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 6  catgctttccacaggctttcttgaactgtgaactc 40
          |||||| ||||||||||||||||||||||||||||
Sbjct: 3  catgctctccacaggctttcttgaactgtgaactc 37




>48952_osa-miR396f:pmrd
          Length = 176

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 6  catgctttccacaggctttcttgaactgtgaactc 40
          |||||| ||||||||||||||||||||||||||||
Sbjct: 3  catgctctccacaggctttcttgaactgtgaactc 37




>48797_oru-miR396:pmrd
          Length = 178

 Score = 61.9 bits (31), Expect = 2e-10
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 6  catgctttccacaggctttcttgaactgtgaactc 40
          |||||| ||||||||||||||||||||||||||||
Sbjct: 4  catgctctccacaggctttcttgaactgtgaactc 38




>48651_hvu-miR396:pmrd
          Length = 107

 Score = 56.0 bits (28), Expect = 1e-08
 Identities = 37/40 (92%)
 Strand = Plus / Plus

                                                  
Query: 1  gcgggcatgctttccacaggctttcttgaactgtgaactc 40
          |||| |||||| |||||||||||||||||||||| |||||
Sbjct: 1  gcggccatgctctccacaggctttcttgaactgtcaactc 40



 Score = 44.1 bits (22), Expect = 5e-05
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 210 gttgatggttcaagaaagcccatggaaaccatgc 243
           |||||||||||||||||| || |||||| |||||
Sbjct: 70  gttgatggttcaagaaagtccttggaaaacatgc 103




>48956_osa-miR396h:pmrd
          Length = 141

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 11  tttccacaggctttcttgaac 31
           |||||||||||||||||||||
Sbjct: 109 tttccacaggctttcttgaac 129




>48955_osa-miR396g:pmrd
          Length = 181

 Score = 42.1 bits (21), Expect = 2e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 11  tttccacaggctttcttgaac 31
           |||||||||||||||||||||
Sbjct: 149 tttccacaggctttcttgaac 169




>48957_osa-miR396i:pmrd
          Length = 121

 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 12  ttccacaggctttcttgaac 31
           ||||||||||||||||||||
Sbjct: 90  ttccacaggctttcttgaac 109




>48506_ghr-miR396a:pmrd
          Length = 87

 Score = 40.1 bits (20), Expect = 8e-04
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 12 ttccacaggctttcttgaac 31
          ||||||||||||||||||||
Sbjct: 66 ttccacaggctttcttgaac 85