miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;EU950590.1/116-359 4577:Zea mays
Length = 244
Score = 331 bits (167), Expect = 3e-90
Identities = 167/167 (100%)
Strand = Plus / Plus
Query: 80 gacggaatgattggctcctcccagtcccagtcccagtcccacccaccaattctcttcccc 139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 gacggaatgattggctcctcccagtcccagtcccagtcccacccaccaattctcttcccc 137
Query: 140 ccgaccggccgtgaattgaattgaatcgaatcgcatcgctgagcttccccccggctcgct 199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ccgaccggccgtgaattgaattgaatcgaatcgcatcgctgagcttccccccggctcgct 197
Query: 200 cacgcgacctgttgatggttcaagaaagcccatggaaaccatgcagc 246
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 cacgcgacctgttgatggttcaagaaagcccatggaaaccatgcagc 244
Score = 75.8 bits (38), Expect = 3e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 3 gggcatgctttccacaggctttcttgaactgtgaactc 40
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggcatgctttccacaggctttcttgaactgtgaactc 38
>RF00648;MIR396;ABXC01004473.1/64146-64350 4558:Sorghum bicolor
(sorghum)
Length = 205
Score = 81.8 bits (41), Expect = 4e-15
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 206 acctgttgatggttcaagaaagcccatggaaaccatgcagc 246
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 acctgttgatggttcaagaaagcccatggaaaccatgcagc 205
Score = 75.8 bits (38), Expect = 3e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 3 gggcatgctttccacaggctttcttgaactgtgaactc 40
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggcatgctttccacaggctttcttgaactgtgaactc 38
>RF00648;MIR396;AL732351.2/3841-4022 4530:Oryza sativa (rice)
Length = 182
Score = 75.8 bits (38), Expect = 3e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 3 gggcatgctttccacaggctttcttgaactgtgaactc 40
||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggcatgctttccacaggctttcttgaactgtgaactc 38
Score = 75.8 bits (38), Expect = 3e-13
Identities = 38/38 (100%)
Strand = Plus / Plus
Query: 206 acctgttgatggttcaagaaagcccatggaaaccatgc 243
||||||||||||||||||||||||||||||||||||||
Sbjct: 142 acctgttgatggttcaagaaagcccatggaaaccatgc 179
>RF00648;MIR396;AP004043.3/15829-15652 39947:Oryza sativa Japonica
Group
Length = 178
Score = 61.9 bits (31), Expect = 4e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 6 catgctttccacaggctttcttgaactgtgaactc 40
|||||| ||||||||||||||||||||||||||||
Sbjct: 4 catgctctccacaggctttcttgaactgtgaactc 38
>RF00648;MIR396;AC226038.1/95545-95657 4641:Musa acuminata
Length = 113
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 4 ggcatgctttccacaggctttcttgaactgtgaact 39
|||||| | |||||||||||||||||||||||||||
Sbjct: 2 ggcatgttctccacaggctttcttgaactgtgaact 37
>RF00648;MIR396;ABXC01003010.1/105635-105521 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 13 tccacaggctttcttgaactgtgaactc 40
||||||||||||||||||||||||||||
Sbjct: 11 tccacaggctttcttgaactgtgaactc 38
Score = 44.1 bits (22), Expect = 0.001
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 209 tgttgatggttcaagaaagcccatggaaaccatg 242
||||||||||||||||||| || |||||| ||||
Sbjct: 78 tgttgatggttcaagaaagtccttggaaaacatg 111
