miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00648;MIR396;EU950590.1/116-359 4577:Zea mays
          Length = 244

 Score =  331 bits (167), Expect = 3e-90
 Identities = 167/167 (100%)
 Strand = Plus / Plus

                                                                       
Query: 80  gacggaatgattggctcctcccagtcccagtcccagtcccacccaccaattctcttcccc 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78  gacggaatgattggctcctcccagtcccagtcccagtcccacccaccaattctcttcccc 137

                                                                       
Query: 140 ccgaccggccgtgaattgaattgaatcgaatcgcatcgctgagcttccccccggctcgct 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 ccgaccggccgtgaattgaattgaatcgaatcgcatcgctgagcttccccccggctcgct 197

                                                          
Query: 200 cacgcgacctgttgatggttcaagaaagcccatggaaaccatgcagc 246
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 cacgcgacctgttgatggttcaagaaagcccatggaaaccatgcagc 244



 Score = 75.8 bits (38), Expect = 3e-13
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 3  gggcatgctttccacaggctttcttgaactgtgaactc 40
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gggcatgctttccacaggctttcttgaactgtgaactc 38




>RF00648;MIR396;ABXC01004473.1/64146-64350 4558:Sorghum bicolor
           (sorghum)
          Length = 205

 Score = 81.8 bits (41), Expect = 4e-15
 Identities = 41/41 (100%)
 Strand = Plus / Plus

                                                    
Query: 206 acctgttgatggttcaagaaagcccatggaaaccatgcagc 246
           |||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 acctgttgatggttcaagaaagcccatggaaaccatgcagc 205



 Score = 75.8 bits (38), Expect = 3e-13
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 3  gggcatgctttccacaggctttcttgaactgtgaactc 40
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gggcatgctttccacaggctttcttgaactgtgaactc 38




>RF00648;MIR396;AL732351.2/3841-4022 4530:Oryza sativa (rice)
          Length = 182

 Score = 75.8 bits (38), Expect = 3e-13
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                
Query: 3  gggcatgctttccacaggctttcttgaactgtgaactc 40
          ||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gggcatgctttccacaggctttcttgaactgtgaactc 38



 Score = 75.8 bits (38), Expect = 3e-13
 Identities = 38/38 (100%)
 Strand = Plus / Plus

                                                 
Query: 206 acctgttgatggttcaagaaagcccatggaaaccatgc 243
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 142 acctgttgatggttcaagaaagcccatggaaaccatgc 179




>RF00648;MIR396;AP004043.3/15829-15652 39947:Oryza sativa Japonica
          Group
          Length = 178

 Score = 61.9 bits (31), Expect = 4e-09
 Identities = 34/35 (97%)
 Strand = Plus / Plus

                                             
Query: 6  catgctttccacaggctttcttgaactgtgaactc 40
          |||||| ||||||||||||||||||||||||||||
Sbjct: 4  catgctctccacaggctttcttgaactgtgaactc 38




>RF00648;MIR396;AC226038.1/95545-95657 4641:Musa acuminata
          Length = 113

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                              
Query: 4  ggcatgctttccacaggctttcttgaactgtgaact 39
          |||||| | |||||||||||||||||||||||||||
Sbjct: 2  ggcatgttctccacaggctttcttgaactgtgaact 37




>RF00648;MIR396;ABXC01003010.1/105635-105521 4558:Sorghum bicolor
          (sorghum)
          Length = 115

 Score = 56.0 bits (28), Expect = 2e-07
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 13 tccacaggctttcttgaactgtgaactc 40
          ||||||||||||||||||||||||||||
Sbjct: 11 tccacaggctttcttgaactgtgaactc 38



 Score = 44.1 bits (22), Expect = 0.001
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                             
Query: 209 tgttgatggttcaagaaagcccatggaaaccatg 242
           ||||||||||||||||||| || |||||| ||||
Sbjct: 78  tgttgatggttcaagaaagtccttggaaaacatg 111