miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00143;mir-6;AAPU01010225.1/182811-182733 7230:Drosophila
mojavensis
Length = 79
Score = 155 bits (78), Expect = 1e-37
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 aaagagaagagaacgttcgctgttgatgtagtcgaattcatttaatctttatatcacagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaagagaagagaacgttcgctgttgatgtagtcgaattcatttaatctttatatcacagt 60
Query: 61 ggctgttcttttttgttt 78
||||||||||||||||||
Sbjct: 61 ggctgttcttttttgttt 78
>RF00143;mir-6;AANI01014795.1/40023-40100 7244:Drosophila virilis
Length = 78
Score = 89.7 bits (45), Expect = 5e-18
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 6 gaagagaacgttcgctgttgatgtagtcgaattcatttaatctttatatcacagtggctg 65
|||||||||||||||||||||||||||||| | | || ||||||||||||||||||||
Sbjct: 6 gaagagaacgttcgctgttgatgtagtcgacctt-tgtactctttatatcacagtggctg 64
Query: 66 ttcttttttgttt 78
|||||||||||||
Sbjct: 65 ttcttttttgttt 77
>RF00143;mir-6;AAPP01018770.1/57538-57612 7217:Drosophila
ananassae
Length = 75
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 48 tttatatcacagtggctgttcttttttgttt 78
|||||||||||||||||||||||||||||||
Sbjct: 44 tttatatcacagtggctgttcttttttgttt 74
>RF00143;mir-6;AAIZ01001618.1/40271-40349 7234:Drosophila
persimilis
Length = 79
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 48 tttatatcacagtggctgttcttttttgttt 78
|||||||||||||||||||||||||||||||
Sbjct: 48 tttatatcacagtggctgttcttttttgttt 78
>RF00143;mir-6;AAPT01020768.1/61474-61396 7222:Drosophila
grimshawi
Length = 79
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 48 tttatatcacagtggctgttcttttttgttt 78
|||||||||||||||||||||||||||||||
Sbjct: 48 tttatatcacagtggctgttcttttttgttt 78
>RF00143;mir-6;AAQB01006291.1/70803-70723 7260:Drosophila
willistoni
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 50 tatatcacagtggctgttcttttttgttt 78
|||||||||||||||||||||||||||||
Sbjct: 52 tatatcacagtggctgttcttttttgttt 80
>RF00143;mir-6;AAEU02000463.1/591532-591454 7245:Drosophila yakuba
Length = 79
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 48 tttatatcacagtggctgttctttttt 74
|||||||||||||||||||||||||||
Sbjct: 48 tttatatcacagtggctgttctttttt 74
>RF00143;mir-6;AAPU01010225.1/183158-183087 7230:Drosophila
mojavensis
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 tttatatcacagtggctgttcttttt 73
||||||||||||||||||||||||||
Sbjct: 41 tttatatcacagtggctgttcttttt 66
>RF00143;mir-6;AAQB01006291.1/70967-70870 7260:Drosophila
willistoni
Length = 98
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 50 tatatcacagtggctgttcttttttgttt 78
|||||||||||||||||||||||| ||||
Sbjct: 69 tatatcacagtggctgttctttttggttt 97
>RF00143;mir-6;AAIZ01001618.1/40125-40208 7234:Drosophila
persimilis
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tatatcacagtggctgttcttttt 73
||||||||||||||||||||||||
Sbjct: 55 tatatcacagtggctgttcttttt 78
>RF00143;mir-6;AAPP01018770.1/57233-57304 7217:Drosophila
ananassae
Length = 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tatatcacagtggctgttcttttt 73
||||||||||||||||||||||||
Sbjct: 43 tatatcacagtggctgttcttttt 66
>RF00143;mir-6;AAPP01018770.1/57378-57462 7217:Drosophila
ananassae
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tatatcacagtggctgttcttttt 73
||||||||||||||||||||||||
Sbjct: 56 tatatcacagtggctgttcttttt 79
>RF00143;mir-6;AAGH01003023.1/9218-9292 7240:Drosophila simulans
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tatatcacagtggctgttcttttt 73
||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69
>RF00143;mir-6;AADE01001895.1/3626-3699 46245:Drosophila
pseudoobscura pseudoobscura
Length = 74
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tatatcacagtggctgttcttttt 73
||||||||||||||||||||||||
Sbjct: 45 tatatcacagtggctgttcttttt 68
>RF00143;mir-6;AAST01030396.1/2399-2475 7240:Drosophila simulans
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tatatcacagtggctgttcttttt 73
||||||||||||||||||||||||
Sbjct: 48 tatatcacagtggctgttcttttt 71
>RF00143;mir-6;AAPT01006453.1/3396-3470 7222:Drosophila grimshawi
Length = 75
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tatatcacagtggctgttcttttt 73
||||||||||||||||||||||||
Sbjct: 46 tatatcacagtggctgttcttttt 69
>RF00143;mir-6;AAPT01006453.1/3535-3614 7222:Drosophila grimshawi
Length = 80
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tatatcacagtggctgttcttttt 73
||||||||||||||||||||||||
Sbjct: 51 tatatcacagtggctgttcttttt 74
>RF00143;mir-6;AANI01014795.1/39694-39769 7244:Drosophila virilis
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tatatcacagtggctgttcttttt 73
||||||||||||||||||||||||
Sbjct: 47 tatatcacagtggctgttcttttt 70
>RF00143;mir-6;AAPU01010225.1/182992-182911 7230:Drosophila
mojavensis
Length = 82
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 50 tatatcacagtggctgttcttttt 73
||||||||||||||||||||||||
Sbjct: 53 tatatcacagtggctgttcttttt 76
>RF00143;mir-6;AAQB01006291.1/71126-71052 7260:Drosophila
willistoni
Length = 75
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 atatcacagtggctgttcttttt 73
|||||||||||||||||||||||
Sbjct: 47 atatcacagtggctgttcttttt 69
>RF00143;mir-6;AANI01014795.1/39849-39929 7244:Drosophila virilis
Length = 81
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 51 atatcacagtggctgttcttttt 73
|||||||||||||||||||||||
Sbjct: 53 atatcacagtggctgttcttttt 75
>RF00143;mir-6;AASV01054526.1/876-807 7240:Drosophila simulans
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 51 atatcacagtggctgttctttt 72
||||||||||||||||||||||
Sbjct: 43 atatcacagtggctgttctttt 64
