miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00813;mir-11;AAPU01010953.1/16155-16075 7230:Drosophila
mojavensis
Length = 81
Score = 161 bits (81), Expect = 2e-39
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 gcacttaacaagaactttttctgtgacctgcgtgaattcctatatgcaaaccgcatcaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcacttaacaagaactttttctgtgacctgcgtgaattcctatatgcaaaccgcatcaca 60
Query: 61 gtctgagttcttgcttagcgc 81
|||||||||||||||||||||
Sbjct: 61 gtctgagttcttgcttagcgc 81
>RF00813;mir-11;AANI01017139.1/215647-215727 7244:Drosophila
virilis
Length = 81
Score = 129 bits (65), Expect = 6e-30
Identities = 77/81 (95%)
Strand = Plus / Plus
Query: 1 gcacttaacaagaactttttctgtgacctgcgtgaattcctatatgcaaaccgcatcaca 60
||||||| ||||||||||||||||||| |||||||| || ||||||||||||||||||||
Sbjct: 1 gcacttatcaagaactttttctgtgacttgcgtgaactcttatatgcaaaccgcatcaca 60
Query: 61 gtctgagttcttgcttagcgc 81
|||||||||||||||||||||
Sbjct: 61 gtctgagttcttgcttagcgc 81
>RF00813;mir-11;AAQB01008624.1/142840-142924 7260:Drosophila
willistoni
Length = 85
Score = 63.9 bits (32), Expect = 3e-10
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 41 tatatgcaaaccgcatcacagtctgagttcttgcttagcg 80
|||||| |||||||||||||||||||||||||||| ||||
Sbjct: 45 tatatgaaaaccgcatcacagtctgagttcttgctgagcg 84
>RF00813;mir-11;AAPT01019388.1/147488-147568 7222:Drosophila
grimshawi
Length = 81
Score = 58.0 bits (29), Expect = 2e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 9 caagaactttttctgtgacctgcgtgaattcctatatgcaaaccgcatcacagtctgagt 68
|||||||| | |||||||| |||||||| | || || ||| |||||||||||||||||
Sbjct: 9 caagaactctctctgtgacttgcgtgaactttcatgtgaaaatcgcatcacagtctgagt 68
Query: 69 tcttgcttagcgc 81
||||||| |||||
Sbjct: 69 tcttgctgagcgc 81
>RF00813;mir-11;AAWU01011517.1/5912-5834 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 79
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 54 catcacagtctgagttcttgcttagcgc 81
||||||||||||||||||||||| ||||
Sbjct: 52 catcacagtctgagttcttgcttggcgc 79
>RF00813;mir-11;AAGE02023911.1/46406-46483 7159:Aedes aegypti
(yellow fever mosquito)
Length = 78
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 catcacagtctgagttcttgctt 76
|||||||||||||||||||||||
Sbjct: 51 catcacagtctgagttcttgctt 73
>RF00813;mir-11;AAFS01000036.1/6151-6079 46245:Drosophila
pseudoobscura pseudoobscura
Length = 73
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 9 caagaactttttctgtgacctgcgtga 35
||||||||| |||||||||||||||||
Sbjct: 9 caagaacttattctgtgacctgcgtga 35
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 54 catcacagtctgagttcttgcttagcg 80
|||||||||||||||||||||| ||||
Sbjct: 46 catcacagtctgagttcttgctgagcg 72
>RF00813;mir-11;ABKP02017914.1/853-942 377271:Anopheles gambiae M
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 catcacagtctgagttcttgct 75
||||||||||||||||||||||
Sbjct: 63 catcacagtctgagttcttgct 84
>RF00813;mir-11;AAPP01019528.1/447265-447343 7217:Drosophila
ananassae
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 catcacagtctgagttcttgct 75
||||||||||||||||||||||
Sbjct: 52 catcacagtctgagttcttgct 73
