miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>37395_dvi-mir-316:mirbase
Length = 88
Score = 141 bits (71), Expect = 9e-35
Identities = 83/87 (95%)
Strand = Plus / Plus
Query: 1 aagttctagtcgatttgtctttttccgcttactgacgttttattgaacaacggcagggaa 60
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||
Sbjct: 1 aagttctagtcgatttgtctttttccgcttactggcgttttattgagcaacgacaggaaa 60
Query: 61 gggaaaaaggcgtatttactatgaatt 87
|||||||||||||||||||||||||||
Sbjct: 61 gggaaaaaggcgtatttactatgaatt 87
>36310_dgr-mir-316:mirbase
Length = 87
Score = 137 bits (69), Expect = 1e-33
Identities = 81/85 (95%)
Strand = Plus / Plus
Query: 2 agttctagtcgatttgtctttttccgcttactgacgttttattgaacaacggcagggaag 61
||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||| |||
Sbjct: 1 agttctagtcgatttgtctttttccgcttactggcgttttattgagcaacgacaggaaag 60
Query: 62 ggaaaaaggcgtatttactatgaat 86
|||||||||||||||||||||||||
Sbjct: 61 ggaaaaaggcgtatttactatgaat 85
>36891_dpe-mir-316:mirbase
Length = 89
Score = 115 bits (58), Expect = 5e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactgacgttttatt-gaacaacggcagggaagg 62
||||||||||||||||||||||||||||||| ||||||||| || ||||| |||| ||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgttttattcgatcaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>36975_dps-mir-316:mirbase
Length = 89
Score = 115 bits (58), Expect = 5e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactgacgttttatt-gaacaacggcagggaagg 62
||||||||||||||||||||||||||||||| ||||||||| || ||||| |||| ||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgttttattcgatcaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>37472_dwi-mir-316:mirbase
Length = 89
Score = 115 bits (58), Expect = 5e-27
Identities = 77/82 (93%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactgacgttttattgaac-aacggcagggaagg 62
||||||||||||||||||||||||||||||| ||||||||| ||| |||| |||| ||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgttttatttaactaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>36145_dan-mir-316:mirbase
Length = 89
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactgacgttttatt-gaacaacggcagggaagg 62
||||||||||||||||||||||||||||||| ||||| ||| ||||||| |||| ||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttaattcaaacaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>37553_dya-mir-316-1:mirbase
Length = 89
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactgacgtttta-ttgaacaacggcagggaagg 62
||||||||||||||||||||||||||||||| ||||| | || ||||||| |||| ||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>37554_dya-mir-316-2:mirbase
Length = 89
Score = 107 bits (54), Expect = 1e-24
Identities = 76/82 (92%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactgacgtttta-ttgaacaacggcagggaagg 62
||||||||||||||||||||||||||||||| ||||| | || ||||||| |||| ||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>36227_der-mir-316:mirbase
Length = 89
Score = 99.6 bits (50), Expect = 3e-22
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactgacgtttta-ttgaacaacggcagggaagg 62
||||||||||||||||||||||||||||||| ||||| | || ||||||| |||| ||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttcatttcaacaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
|||||||||||||| |||||||
Sbjct: 64 gaaaaaggcgtattcactatga 85
>36469_dme-mir-316:mirbase
Length = 89
Score = 99.6 bits (50), Expect = 3e-22
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactgacgttt-tattgaacaacggcagggaagg 62
||||||||||||||||||||||||||||||| ||||| ||| |||||| |||| ||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>36470_dme-mir-316:mirbase
Length = 89
Score = 99.6 bits (50), Expect = 3e-22
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactgacgttt-tattgaacaacggcagggaagg 62
||||||||||||||||||||||||||||||| ||||| ||| |||||| |||| ||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttcaattccacaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>37183_dse-mir-316:mirbase
Length = 89
Score = 99.6 bits (50), Expect = 3e-22
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactgacgtttta-ttgaacaacggcagggaagg 62
||||||||||||||||||||||||||||||| ||||| | || |||||| |||| ||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttcatttccacaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>37259_dsi-mir-316:mirbase
Length = 89
Score = 99.6 bits (50), Expect = 3e-22
Identities = 75/82 (91%), Gaps = 1/82 (1%)
Strand = Plus / Plus
Query: 4 ttctagtcgatttgtctttttccgcttactgacgtttta-ttgaacaacggcagggaagg 62
||||||||||||||||||||||||||||||| ||||| | || |||||| |||| ||||
Sbjct: 4 ttctagtcgatttgtctttttccgcttactggcgtttcatttccacaacgacaggaaagg 63
Query: 63 gaaaaaggcgtatttactatga 84
||||||||||||||||||||||
Sbjct: 64 gaaaaaggcgtatttactatga 85
>35226_aae-mir-316:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 gatttgtctttttccgcttactg 34
|||||||||||||||||||||||
Sbjct: 15 gatttgtctttttccgcttactg 37
>36046_cqu-mir-316:mirbase
Length = 139
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 gatttgtctttttccgcttactg 34
|||||||||||||||||||||||
Sbjct: 32 gatttgtctttttccgcttactg 54
