miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36955_dps-mir-281-1:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatttaatactgtca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatttaatactgtca 60
Query: 61 tggaattgctctctttgtataatattcg 88
||||||||||||||||||||||||||||
Sbjct: 61 tggaattgctctctttgtataatattcg 88
>37375_dvi-mir-281-1:mirbase
Length = 88
Score = 111 bits (56), Expect = 8e-26
Identities = 80/88 (90%)
Strand = Plus / Plus
Query: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatttaatactgtca 60
|||||| |||||||||||||||||||||||||||||| | || ||| |||||||||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagtaacaaatgtaatactgtca 60
Query: 61 tggaattgctctctttgtataatattcg 88
|||||||||||||||||||| |||||||
Sbjct: 61 tggaattgctctctttgtatgatattcg 88
>36123_dan-mir-281-1:mirbase
Length = 86
Score = 105 bits (53), Expect = 5e-24
Identities = 80/88 (90%), Gaps = 2/88 (2%)
Strand = Plus / Plus
Query: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatttaatactgtca 60
|||||| |||||||||||||||||||||||||||||| | |||| || || |||||||
Sbjct: 1 cgaatacgtgaataaagagagctgtccgtcgacagtccagatacctat--aacactgtca 58
Query: 61 tggaattgctctctttgtataatattcg 88
||||||||||||||||||||||||||||
Sbjct: 59 tggaattgctctctttgtataatattcg 86
>36290_dgr-mir-281-1:mirbase
Length = 88
Score = 105 bits (53), Expect = 5e-24
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaa-tttaatactgtc 59
|||||| |||||||||||||||||||||||||||||| | ||| || ||||||||||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtcca-gtataaattttaatactgtc 59
Query: 60 atggaattgctctctttgtataatattcg 88
||||||||||||||||||||| |||||||
Sbjct: 60 atggaattgctctctttgtatgatattcg 88
>36201_der-mir-281-1:mirbase
Length = 90
Score = 97.6 bits (49), Expect = 1e-21
Identities = 82/91 (90%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatttaata---ctg 57
|||||| |||||||||||||||||||||||||||||| | |||| ||||||| |||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaacca-tttaatatcactg 59
Query: 58 tcatggaattgctctctttgtataatattcg 88
|||||||||||||||||||||||||||||||
Sbjct: 60 tcatggaattgctctctttgtataatattcg 90
>36424_dme-mir-281-1:mirbase
Length = 90
Score = 97.6 bits (49), Expect = 1e-21
Identities = 82/91 (90%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatttaata---ctg 57
|||||| |||||||||||||||||||||||||||||| | | | | |||||||| |||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtcca-gaaactatttaatatcactg 59
Query: 58 tcatggaattgctctctttgtataatattcg 88
|||||||||||||||||||||||||||||||
Sbjct: 60 tcatggaattgctctctttgtataatattcg 90
>36425_dme-mir-281-1:mirbase
Length = 90
Score = 97.6 bits (49), Expect = 1e-21
Identities = 82/91 (90%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatttaata---ctg 57
|||||| |||||||||||||||||||||||||||||| | | | | |||||||| |||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtcca-gaaactatttaatatcactg 59
Query: 58 tcatggaattgctctctttgtataatattcg 88
|||||||||||||||||||||||||||||||
Sbjct: 60 tcatggaattgctctctttgtataatattcg 90
>37161_dse-mir-281-1:mirbase
Length = 90
Score = 97.6 bits (49), Expect = 1e-21
Identities = 82/91 (90%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatttaata---ctg 57
|||||| |||||||||||||||||||||||||||||| | |||| ||||||| |||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaacca-tttaatatcactg 59
Query: 58 tcatggaattgctctctttgtataatattcg 88
|||||||||||||||||||||||||||||||
Sbjct: 60 tcatggaattgctctctttgtataatattcg 90
>37454_dwi-mir-281-1:mirbase
Length = 90
Score = 93.7 bits (47), Expect = 2e-20
Identities = 80/90 (88%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgt--accaatttaatactgt 58
|||||| |||||||||||||||||||||||||||||| | | || | ||||| |||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagttaaacgattttaaaactgt 60
Query: 59 catggaattgctctctttgtataatattcg 88
|||||||||||||||||||||| |||||||
Sbjct: 61 catggaattgctctctttgtatgatattcg 90
>36798_dmo-mir-281-1:mirbase
Length = 88
Score = 89.7 bits (45), Expect = 3e-19
Identities = 80/89 (89%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatt-taatactgtc 59
|||||| |||||||||||||||||||||||||||||| | ||| ||| ||| ||||||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtcca-gtaaagattgtaaaactgtc 59
Query: 60 atggaattgctctctttgtataatattcg 88
||||||||||||||||||||| |||||||
Sbjct: 60 atggaattgctctctttgtatgatattcg 88
>37238_dsi-mir-281:mirbase
Length = 90
Score = 89.7 bits (45), Expect = 3e-19
Identities = 81/91 (89%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatttaata---ctg 57
|||||| |||||||||||||||||||||||||||||| | | || ||||||| |||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtccagaaagca-tttaatatcactg 59
Query: 58 tcatggaattgctctctttgtataatattcg 88
|||||||||||||||||||||||||||||||
Sbjct: 60 tcatggaattgctctctttgtataatattcg 90
>37530_dya-mir-281-1:mirbase
Length = 90
Score = 89.7 bits (45), Expect = 3e-19
Identities = 81/91 (89%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 cgaataggtgaataaagagagctgtccgtcgacagtcaacgtaccaatttaata---ctg 57
|||||| |||||||||||||||||||||||||||||| | | | |||||||| |||
Sbjct: 1 cgaataagtgaataaagagagctgtccgtcgacagtcca-gaattcatttaatatcactg 59
Query: 58 tcatggaattgctctctttgtataatattcg 88
|||||||||||||||||||||||||||||||
Sbjct: 60 tcatggaattgctctctttgtataatattcg 90
>37531_dya-mir-281-2:mirbase
Length = 92
Score = 87.7 bits (44), Expect = 1e-18
Identities = 71/78 (91%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 15 aagagagctgtccgtcgacagtcaacgta---ccaatt-taatactgtcatggaattgct 70
||||||||| ||||||||||||||| || |||||| |||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagtcaagttaataccaattgtaatactgtcatggaattgct 74
Query: 71 ctctttgtataatattcg 88
||||||||||||||||||
Sbjct: 75 ctctttgtataatattcg 92
>36876_dpe-mir-281-2:mirbase
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 73/81 (90%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagtcaacgta--ccaatt-taatactgtcatggaatt 67
||||||||||||| ||||||||||||||| || | ||| ||||||||||||||||||
Sbjct: 11 aataaagagagctatccgtcgacagtcaagttaatcagattgtaatactgtcatggaatt 70
Query: 68 gctctctttgtataatattcg 88
|||||||||||||||||||||
Sbjct: 71 gctctctttgtataatattcg 91
>36956_dps-mir-281-2:mirbase
Length = 91
Score = 83.8 bits (42), Expect = 2e-17
Identities = 73/81 (90%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagtcaacgta--ccaatt-taatactgtcatggaatt 67
||||||||||||| ||||||||||||||| || | ||| ||||||||||||||||||
Sbjct: 11 aataaagagagctatccgtcgacagtcaagttaatcagattgtaatactgtcatggaatt 70
Query: 68 gctctctttgtataatattcg 88
|||||||||||||||||||||
Sbjct: 71 gctctctttgtataatattcg 91
>36799_dmo-mir-281-2:mirbase
Length = 93
Score = 81.8 bits (41), Expect = 7e-17
Identities = 41/41 (100%)
Strand = Plus / Plus
Query: 48 tttaatactgtcatggaattgctctctttgtataatattcg 88
|||||||||||||||||||||||||||||||||||||||||
Sbjct: 53 tttaatactgtcatggaattgctctctttgtataatattcg 93
>36291_dgr-mir-281-2:mirbase
Length = 93
Score = 77.8 bits (39), Expect = 1e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 50 taatactgtcatggaattgctctctttgtataatattcg 88
|||||||||||||||||||||||||||||||||||||||
Sbjct: 55 taatactgtcatggaattgctctctttgtataatattcg 93
>37376_dvi-mir-281-2:mirbase
Length = 91
Score = 77.8 bits (39), Expect = 1e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 50 taatactgtcatggaattgctctctttgtataatattcg 88
|||||||||||||||||||||||||||||||||||||||
Sbjct: 53 taatactgtcatggaattgctctctttgtataatattcg 91
>37455_dwi-mir-281-2:mirbase
Length = 97
Score = 77.8 bits (39), Expect = 1e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 50 taatactgtcatggaattgctctctttgtataatattcg 88
|||||||||||||||||||||||||||||||||||||||
Sbjct: 59 taatactgtcatggaattgctctctttgtataatattcg 97
>36202_der-mir-281-2:mirbase
Length = 92
Score = 71.9 bits (36), Expect = 7e-14
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 15 aagagagctgtccgtcgacagtcaacgta---ccaatt-taatactgtcatggaattgct 70
||||||||| ||||||||||||||| || || ||| |||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagtcaagttaataccgattgtaatactgtcatggaattgct 74
Query: 71 ctctttgtataatattcg 88
|||||||||||| |||||
Sbjct: 75 ctctttgtataacattcg 92
>36426_dme-mir-281-2:mirbase
Length = 92
Score = 71.9 bits (36), Expect = 7e-14
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 15 aagagagctgtccgtcgacagtcaacgta---ccaatt-taatactgtcatggaattgct 70
||||||||| ||||||||||||||| || || ||| |||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagtcaagttaagaccgattgtaatactgtcatggaattgct 74
Query: 71 ctctttgtataatattcg 88
|||||||||||| |||||
Sbjct: 75 ctctttgtataacattcg 92
>36427_dme-mir-281-2:mirbase
Length = 92
Score = 71.9 bits (36), Expect = 7e-14
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 15 aagagagctgtccgtcgacagtcaacgta---ccaatt-taatactgtcatggaattgct 70
||||||||| ||||||||||||||| || || ||| |||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagtcaagttaagaccgattgtaatactgtcatggaattgct 74
Query: 71 ctctttgtataatattcg 88
|||||||||||| |||||
Sbjct: 75 ctctttgtataacattcg 92
>37162_dse-mir-281-2:mirbase
Length = 92
Score = 71.9 bits (36), Expect = 7e-14
Identities = 69/78 (88%), Gaps = 4/78 (5%)
Strand = Plus / Plus
Query: 15 aagagagctgtccgtcgacagtcaacgta---ccaatt-taatactgtcatggaattgct 70
||||||||| ||||||||||||||| || || ||| |||||||||||||||||||||
Sbjct: 15 aagagagctatccgtcgacagtcaagttaagaccgattgtaatactgtcatggaattgct 74
Query: 71 ctctttgtataatattcg 88
|||||||||||| |||||
Sbjct: 75 ctctttgtataacattcg 92
>36124_dan-mir-281-2:mirbase
Length = 94
Score = 69.9 bits (35), Expect = 3e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 50 taatactgtcatggaattgctctctttgtataatattcg 88
||||||||||||||||||||||||||||||||| |||||
Sbjct: 56 taatactgtcatggaattgctctctttgtataacattcg 94
>25355_odi-mir-281:mirbase
Length = 101
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 51 aatactgtcatggaattgctctctt 75
|||||||||||||||||||||||||
Sbjct: 61 aatactgtcatggaattgctctctt 85
>35210_aae-mir-281:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctcttt 76
|||||||||||||||||||||||
Sbjct: 56 actgtcatggaattgctctcttt 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagt 36
||||||||||||| ||||||||||||
Sbjct: 17 aataaagagagctatccgtcgacagt 42
>35305_aga-mir-281:mirbase
Length = 102
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctcttt 76
|||||||||||||||||||||||
Sbjct: 55 actgtcatggaattgctctcttt 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagt 36
||||||||||||| ||||||||||||
Sbjct: 16 aataaagagagctatccgtcgacagt 41
>36038_cqu-mir-281:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctcttt 76
|||||||||||||||||||||||
Sbjct: 61 actgtcatggaattgctctcttt 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 aataaagagagctgtccgtcgacagt 36
||||||||||||| ||||||||||||
Sbjct: 22 aataaagagagctatccgtcgacagt 47
>38122_bma-mir-281:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctcttt 76
|||||||||||||||||||||||
Sbjct: 51 actgtcatggaattgctctcttt 73
>38884_lgi-mir-281:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 51 aatactgtcatggaattgctctcttt 76
|||||||||||||| |||||||||||
Sbjct: 56 aatactgtcatggagttgctctcttt 81
>35386_ame-mir-281:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctctttgta 79
||||||||||| ||||||||||||||
Sbjct: 59 actgtcatggagttgctctctttgta 84
>37589_ngi-mir-281:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctctttgt 78
||||||||||| |||||||||||||
Sbjct: 45 actgtcatggacttgctctctttgt 69
>37620_nlo-mir-281:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctctttgt 78
||||||||||| |||||||||||||
Sbjct: 45 actgtcatggacttgctctctttgt 69
>37663_nvi-mir-281:mirbase
Length = 103
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 actgtcatggaattgctctctttgt 78
||||||||||| |||||||||||||
Sbjct: 59 actgtcatggacttgctctctttgt 83
