miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AAIZ01016032.1/2164-2232 7234:Drosophila persimilis
Length = 69
Score = 137 bits (69), Expect = 2e-32
Identities = 69/69 (100%)
Strand = Plus / Plus
Query: 5 gcaaattgaggtagtaggttgtatagtagtacttcagatcgtactatacaatgtgctagc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcaaattgaggtagtaggttgtatagtagtacttcagatcgtactatacaatgtgctagc 60
Query: 65 tttctttgc 73
|||||||||
Sbjct: 61 tttctttgc 69
>RF00027;let-7;AAPP01015675.1/360249-360318 7217:Drosophila
ananassae
Length = 70
Score = 91.7 bits (46), Expect = 1e-18
Identities = 65/70 (92%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 5 gcaaattgaggtagtaggttgtatagtagtacttcaga-tcgtactatacaatgtgctag 63
||||||||||||||||||||||||||||| | | ||| |||||||||||||||||||||
Sbjct: 1 gcaaattgaggtagtaggttgtatagtagcaactaagaatcgtactatacaatgtgctag 60
Query: 64 ctttctttgc 73
||||||||||
Sbjct: 61 ctttctttgc 70
>RF00027;let-7;AAQB01006449.1/358437-358507 7260:Drosophila
willistoni
Length = 71
Score = 83.8 bits (42), Expect = 3e-16
Identities = 66/72 (91%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 5 gcaaattgaggtagtaggttgtatagtagta---cttcagatcgtactatacaatgtgct 61
||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 1 gcaaattgaggtagtaggttgtatagtagtaattattca-atcatactatacaatgtgct 59
Query: 62 agctttctttgc 73
||||||||||||
Sbjct: 60 agctttctttgc 71
>RF00027;let-7;AAPU01010514.1/89793-89724 7230:Drosophila
mojavensis
Length = 70
Score = 83.8 bits (42), Expect = 3e-16
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 5 gcaaattgaggtagtaggttgtatagtagtactt-cagatcgtactatacaatgtgctag 63
|||||||||||||||||||||||||||||||||| ||| | ||||||||| |||||||
Sbjct: 1 gcaaattgaggtagtaggttgtatagtagtacttatagaccatactatacagcgtgctag 60
Query: 64 ctttctttgc 73
||||||||||
Sbjct: 61 ctttctttgc 70
>RF00027;let-7;AANI01016295.1/2335-2404 7244:Drosophila virilis
Length = 70
Score = 75.8 bits (38), Expect = 7e-14
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 5 gcaaattgaggtagtaggttgtatagtagtactt-cagatcgtactatacaatgtgctag 63
||||||||||||||||||||||||||||||| || ||| | ||||||||| |||||||
Sbjct: 1 gcaaattgaggtagtaggttgtatagtagtatttatagagcatactatacagcgtgctag 60
Query: 64 ctttctttgc 73
||||||||||
Sbjct: 61 ctttctttgc 70
>RF00027;let-7;AASS01032016.1/98-33 7240:Drosophila simulans
Length = 66
Score = 67.9 bits (34), Expect = 2e-11
Identities = 60/66 (90%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 5 gcaaattgaggtagtaggttgtatagtagtacttcagatcgtactatacaatgtgctagc 64
|||||||||||||||| |||||||||||||| | || ||| |||||||| ||||||||||
Sbjct: 1 gcaaattgaggtagta-gttgtatagtagtaatacacatcatactatac-atgtgctagc 58
Query: 65 tttctt 70
||||||
Sbjct: 59 tttctt 64
>RF00027;let-7;AAPT01004257.1/151-220 7222:Drosophila grimshawi
Length = 70
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 5 gcaaattgaggtagtaggttgtatagtagta 35
|||||||||||||||||||||||||||||||
Sbjct: 1 gcaaattgaggtagtaggttgtatagtagta 31
>RF00027;let-7;BABH01009736.1/23777-23700 7091:Bombyx mori
(domestic silkworm)
Length = 78
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttgaggtagtaggttgtatagta 32
|||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagta 28
>RF00027;let-7;AADG05003176.1/75207-75290 7460:Apis mellifera
(honey bee)
Length = 84
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagtag 33
|||||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagtag 29
>RF00027;let-7;AAJJ01000960.1/12168-12093 7070:Tribolium castaneum
(red flour beetle)
Length = 76
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 ttgaggtagtaggttgtatagta 32
|||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagta 28
>RF00027;let-7;ABEG01002465.1/18268-18339 135651:Caenorhabditis
brenneri
Length = 72
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgaggtagtaggttgtatagt 31
||||||||||||||||||||||
Sbjct: 5 ttgaggtagtaggttgtatagt 26
>RF00027;let-7;AAGU02067998.1/2847-2772 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgaggtagtaggttgtatagt 31
||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagt 27
>RF00027;let-7;CAAB01004143.1/18701-18777 31033:Takifugu rubripes
Length = 77
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgaggtagtaggttgtatagt 31
||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagt 27
>RF00027;let-7;AANH01000597.1/43752-43676 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 77
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgaggtagtaggttgtatagt 31
||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagt 27
>RF00027;let-7;BAAE01285721.1/657-581 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 ttgaggtagtaggttgtatagt 31
||||||||||||||||||||||
Sbjct: 6 ttgaggtagtaggttgtatagt 27
>RF00027;let-7;ABIR01000029.1/50721-50818 6334:Trichinella
spiralis
Length = 98
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;ABLA01021413.1/563-640 51029:Heterodera glycines
Length = 78
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AAQA01000457.1/25368-25290 6279:Brugia malayi
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;Z70203.2/12451-12379 6239:Caenorhabditis elegans
Length = 73
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagt 26
>RF00027;let-7;AAGD02006482.1/22892-22821 31234:Caenorhabditis
remanei
Length = 72
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagt 26
>RF00027;let-7;AC084471.1/10992-10920 6238:Caenorhabditis briggsae
Length = 73
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagt 26
>RF00027;let-7;ABKE01000556.1/121-205 54126:Pristionchus pacificus
Length = 85
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 6 tgaggtagtaggttgtatagt 26
>RF00027;let-7;AAFR03057393.1/5692-5610 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AANN01118339.1/762-680 9365:Erinaceus europaeus
(western European hedgehog)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AAKN02054982.1/20495-20418 10141:Cavia porcellus
(domestic guinea pig)
Length = 78
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;ABRQ01826413.1/555-477 9813:Procavia capensis (cape
rock hyrax)
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;ABQF01051678.1/9631-9544 59729:Taeniopygia guttata
Length = 88
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AADN02044881.1/4561-4474 9031:Gallus gallus
(chicken)
Length = 88
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;CR847944.11/44965-45050 7955:Danio rerio
(zebrafish)
Length = 86
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;BX897734.11/94677-94763 7955:Danio rerio
(zebrafish)
Length = 87
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;BX284646.4/46451-46375 7955:Danio rerio (zebrafish)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;BX663520.9/232739-232815 7955:Danio rerio
(zebrafish)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;CAAB01006742.1/7972-8057 31033:Takifugu rubripes
Length = 86
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;CAAB01000128.1/27883-27800 31033:Takifugu rubripes
Length = 84
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AANH01007473.1/5803-5888 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 86
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;BAAE01151389.1/288-202 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;BAAF04096587.1/14029-13948 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AAVX01007479.1/3161-3085 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AAVX01338774.1/620-544 7868:Callorhinchus milii
(ghost shark)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;ABEP02005607.1/34812-34887 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;ABEP02005607.1/36672-36748 7739:Branchiostoma
floridae (Florida lancelet)
Length = 77
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AAZX01015868.1/1070-988 7425:Nasonia vitripennis
(jewel wasp)
Length = 83
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 11 tgaggtagtaggttgtatagt 31
|||||||||||||||||||||
Sbjct: 7 tgaggtagtaggttgtatagt 27
>RF00027;let-7;AAGE02002929.1/321613-321685 7159:Aedes aegypti
(yellow fever mosquito)
Length = 73
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 ttgaggtagtaggttgtatagtagt 34
|||||||||| ||||||||||||||
Sbjct: 6 ttgaggtagttggttgtatagtagt 30
