miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00047;mir-2;AAFS01000655.1/43310-43241 46245:Drosophila
pseudoobscura pseudoobscura
Length = 70
Score = 139 bits (70), Expect = 5e-33
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 4 gggctcacaaagtggttgtgaaatgcattttgctttgcccgcatatcacagccagctttg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gggctcacaaagtggttgtgaaatgcattttgctttgcccgcatatcacagccagctttg 60
Query: 64 atgagctcgg 73
||||||||||
Sbjct: 61 atgagctcgg 70
>RF00047;mir-2;AAQB01006412.1/121627-121699 7260:Drosophila
willistoni
Length = 73
Score = 83.8 bits (42), Expect = 3e-16
Identities = 64/69 (92%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 6 gctcacaaagtggttgtgaaatgcatt--ttgctttgccc-gcatatcacagccagcttt 62
||||||||||||||||||||||||||| ||||||| || |||||||||||||||||||
Sbjct: 3 gctcacaaagtggttgtgaaatgcattatttgctttatccagcatatcacagccagcttt 62
Query: 63 gatgagctc 71
|||||||||
Sbjct: 63 gatgagctc 71
>RF00047;mir-2;AANI01013749.1/162154-162082 7244:Drosophila
virilis
Length = 73
Score = 83.8 bits (42), Expect = 3e-16
Identities = 62/68 (91%), Gaps = 3/68 (4%)
Strand = Plus / Plus
Query: 6 gctcacaaagtggttgtgaaatgcatttt---gctttgcccgcatatcacagccagcttt 62
|||| ||||||||||||||||||||||| ||||||| ||||||||||||||||||||
Sbjct: 3 gctctcaaagtggttgtgaaatgcatttgaaagctttgcgcgcatatcacagccagcttt 62
Query: 63 gatgagct 70
||||||||
Sbjct: 63 gatgagct 70
>RF00047;mir-2;AASS01038618.1/536-465 7240:Drosophila simulans
Length = 72
Score = 81.8 bits (41), Expect = 1e-15
Identities = 64/69 (92%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 4 gggctcacaaagtggttgtgaaatgcatttt-gctttgcccg-catatcacagccagctt 61
|||||| ||||||||||||||||||||||| ||||||| || |||||||||||||||||
Sbjct: 1 gggctctcaaagtggttgtgaaatgcatttccgctttgcgcggcatatcacagccagctt 60
Query: 62 tgatgagct 70
|||||||||
Sbjct: 61 tgatgagct 69
>RF00047;mir-2;AAPU01010520.1/77496-77569 7230:Drosophila
mojavensis
Length = 74
Score = 63.9 bits (32), Expect = 3e-10
Identities = 60/69 (86%), Gaps = 4/69 (5%)
Strand = Plus / Plus
Query: 6 gctcacaaagtggttgtgaaatgcattttg----ctttgcccgcatatcacagccagctt 61
|||| ||||| || |||||||||||||||| |||||| ||||||||||||||||||
Sbjct: 3 gctctcaaagaggctgtgaaatgcattttgaaagctttgcgagcatatcacagccagctt 62
Query: 62 tgatgagct 70
|||||||||
Sbjct: 63 tgatgagct 71
>RF00047;mir-2;AAWU01020422.1/10370-10299 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 72
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 43 cgcatatcacagccagctttgatgagct 70
||||||||||||||||||||||||||||
Sbjct: 42 cgcatatcacagccagctttgatgagct 69
>RF00047;mir-2;AANI01013749.1/161880-161816 7244:Drosophila
virilis
Length = 65
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 43 cgcatatcacagccagctttgatgagct 70
||||||||||||||||||||||||||||
Sbjct: 35 cgcatatcacagccagctttgatgagct 62
>RF00047;mir-2;AASC02030054.1/10531-10596 6500:Aplysia californica
(California sea hare)
Length = 66
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgagct 70
||||||||||||||||||||||||||
Sbjct: 38 catatcacagccagctttgatgagct 63
>RF00047;mir-2;AAGE02012793.1/16205-16139 7159:Aedes aegypti
(yellow fever mosquito)
Length = 67
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgagct 70
||||||||||||||||||||||||||
Sbjct: 39 catatcacagccagctttgatgagct 64
>RF00047;mir-2;AAAB01008807.1/11607145-11607220 180454:Anopheles
gambiae str. PEST
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgagct 70
||||||||||||||||||||||||||
Sbjct: 48 catatcacagccagctttgatgagct 73
>RF00047;mir-2;AAZO01007079.1/41194-41254 121224:Pediculus humanus
corporis (human body louse)
Length = 61
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgagc 69
|||||||||||||||||||||||||
Sbjct: 33 catatcacagccagctttgatgagc 57
>RF00047;mir-2;ABLF01009126.1/4189-4122 7029:Acyrthosiphon pisum
(pea aphid)
Length = 68
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgagc 69
|||||||||||||||||||||||||
Sbjct: 40 catatcacagccagctttgatgagc 64
>RF00047;mir-2;BABH01007323.1/5785-5717 7091:Bombyx mori (domestic
silkworm)
Length = 69
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgagc 69
|||||||||||||||||||||||||
Sbjct: 41 catatcacagccagctttgatgagc 65
>RF00047;mir-2;AADG05000005.1/25868-25935 7460:Apis mellifera
(honey bee)
Length = 68
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgagc 69
|||||||||||||||||||||||||
Sbjct: 40 catatcacagccagctttgatgagc 64
>RF00047;mir-2;AAJJ01001714.1/2663-2727 7070:Tribolium castaneum
(red flour beetle)
Length = 65
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgagc 69
|||||||||||||||||||||||||
Sbjct: 37 catatcacagccagctttgatgagc 61
>RF00047;mir-2;AAJJ01001714.1/2814-2878 7070:Tribolium castaneum
(red flour beetle)
Length = 65
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgagc 69
|||||||||||||||||||||||||
Sbjct: 37 catatcacagccagctttgatgagc 61
>RF00047;mir-2;ABJB010692301.1/11251-11184 6945:Ixodes scapularis
(black-legged tick)
Length = 68
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgagc 69
|||||||||||||||||||||||||
Sbjct: 40 catatcacagccagctttgatgagc 64
>RF00047;mir-2;AASC02030054.1/11043-11110 6500:Aplysia californica
(California sea hare)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 gcatatcacagccagctttgatga 67
||||||||||||||||||||||||
Sbjct: 39 gcatatcacagccagctttgatga 62
>RF00047;mir-2;AAZO01007079.1/41397-41469 121224:Pediculus humanus
corporis (human body louse)
Length = 73
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgag 68
||||||||||||||||||||||||
Sbjct: 45 catatcacagccagctttgatgag 68
>RF00047;mir-2;AAZX01013101.1/19937-20004 7425:Nasonia vitripennis
(jewel wasp)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 43 cgcatatcacagccagctttgatg 66
||||||||||||||||||||||||
Sbjct: 38 cgcatatcacagccagctttgatg 61
>RF00047;mir-2;AASC02030054.1/10042-10110 6500:Aplysia californica
(California sea hare)
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 tatcacagccagctttgatgagc 69
|||||||||||||||||||||||
Sbjct: 43 tatcacagccagctttgatgagc 65
>RF00047;mir-2;AAZO01007079.1/40138-40206 121224:Pediculus humanus
corporis (human body louse)
Length = 69
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 tatcacagccagctttgatgagc 69
|||||||||||||||||||||||
Sbjct: 43 tatcacagccagctttgatgagc 65
>RF00047;mir-2;ABLF01009126.1/4927-4856 7029:Acyrthosiphon pisum
(pea aphid)
Length = 72
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 tatcacagccagctttgatgagc 69
|||||||||||||||||||||||
Sbjct: 46 tatcacagccagctttgatgagc 68
>RF00047;mir-2;BABH01007323.1/6199-6133 7091:Bombyx mori (domestic
silkworm)
Length = 67
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 tatcacagccagctttgatgagc 69
|||||||||||||||||||||||
Sbjct: 41 tatcacagccagctttgatgagc 63
>RF00047;mir-2;AAZX01013101.1/18328-18390 7425:Nasonia vitripennis
(jewel wasp)
Length = 63
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 tatcacagccagctttgatgagc 69
|||||||||||||||||||||||
Sbjct: 37 tatcacagccagctttgatgagc 59
>RF00047;mir-2;AADG05000005.1/25028-25089 7460:Apis mellifera
(honey bee)
Length = 62
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 tatcacagccagctttgatgagc 69
|||||||||||||||||||||||
Sbjct: 36 tatcacagccagctttgatgagc 58
>RF00047;mir-2;AADG05000005.1/26814-26880 7460:Apis mellifera
(honey bee)
Length = 67
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 tatcacagccagctttgatgagc 69
|||||||||||||||||||||||
Sbjct: 41 tatcacagccagctttgatgagc 63
>RF00047;mir-2;AAGE02012793.1/18045-17973 7159:Aedes aegypti
(yellow fever mosquito)
Length = 73
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 tatcacagccagctttgatgagc 69
|||||||||||||||||||||||
Sbjct: 47 tatcacagccagctttgatgagc 69
>RF00047;mir-2;AAAB01008807.1/11606832-11606920 180454:Anopheles
gambiae str. PEST
Length = 89
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 43 cgcatatcacagccagctttgatgagc 69
|||||||||||||||||||||| ||||
Sbjct: 59 cgcatatcacagccagctttgaagagc 85
>RF00047;mir-2;ABKP02009549.1/3713-3802 377271:Anopheles gambiae M
Length = 90
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 43 cgcatatcacagccagctttgatgagc 69
|||||||||||||||||||||| ||||
Sbjct: 60 cgcatatcacagccagctttgaagagc 86
>RF00047;mir-2;ABKQ02016231.1/17544-17613 377270:Anopheles gambiae
S
Length = 70
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 tatcacagccagctttgatgagc 69
|||||||||||||||||||||||
Sbjct: 44 tatcacagccagctttgatgagc 66
>RF00047;mir-2;AAJJ01001714.1/2295-2359 7070:Tribolium castaneum
(red flour beetle)
Length = 65
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 47 tatcacagccagctttgatgagc 69
|||||||||||||||||||||||
Sbjct: 39 tatcacagccagctttgatgagc 61
>RF00047;mir-2;ABJB010692301.1/11645-11574 6945:Ixodes scapularis
(black-legged tick)
Length = 72
Score = 46.1 bits (23), Expect = 6e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 gcatatcacagccagctttgatgagct 70
|||||||||||||| ||||||||||||
Sbjct: 43 gcatatcacagccacctttgatgagct 69
>RF00047;mir-2;AAQA01003088.1/958-1028 6279:Brugia malayi
Length = 71
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatg 66
||||||||||||||||||||||
Sbjct: 43 catatcacagccagctttgatg 64
>RF00047;mir-2;AAGD02006756.1/79087-79015 31234:Caenorhabditis
remanei
Length = 73
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatg 66
||||||||||||||||||||||
Sbjct: 45 catatcacagccagctttgatg 66
>RF00047;mir-2;CAAC02000589.1/1009397-1009308 6238:Caenorhabditis
briggsae
Length = 90
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatg 66
||||||||||||||||||||||
Sbjct: 62 catatcacagccagctttgatg 83
>RF00047;mir-2;Z83731.1/29638-29566 6239:Caenorhabditis elegans
Length = 73
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatg 66
||||||||||||||||||||||
Sbjct: 45 catatcacagccagctttgatg 66
>RF00047;mir-2;ABEG01010026.1/20408-20482 135651:Caenorhabditis
brenneri
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatg 66
||||||||||||||||||||||
Sbjct: 47 catatcacagccagctttgatg 68
>RF00047;mir-2;AASC02030054.1/10795-10859 6500:Aplysia californica
(California sea hare)
Length = 65
Score = 44.1 bits (22), Expect = 2e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgagct 70
|||||||||| |||||||||||||||
Sbjct: 37 catatcacagtcagctttgatgagct 62
>RF00047;mir-2;AAZX01013101.1/18917-18986 7425:Nasonia vitripennis
(jewel wasp)
Length = 70
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgagc 69
||||||||||||||||||| |||||
Sbjct: 42 catatcacagccagctttgttgagc 66
>RF00047;mir-2;AAWU01020422.1/10643-10573 7176:Culex
quinquefasciatus (southern house mosquito)
Length = 71
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgagc 69
|||||||||||||||||||| ||||
Sbjct: 43 catatcacagccagctttgaagagc 67
>RF00047;mir-2;AAGE02012793.1/17551-17479 7159:Aedes aegypti
(yellow fever mosquito)
Length = 73
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgagc 69
|||||||||||||||||||| ||||
Sbjct: 45 catatcacagccagctttgaagagc 69
>RF00047;mir-2;FJ485602.1/38-106 7227:Drosophila melanogaster
(fruit fly)
Length = 69
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgagc 69
|||||||||||||||||||| ||||
Sbjct: 41 catatcacagccagctttgaggagc 65
>RF00047;mir-2;AANI01013749.1/162474-162400 7244:Drosophila
virilis
Length = 75
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 45 catatcacagccagctttgatgagc 69
|||||||||||||||||||| ||||
Sbjct: 47 catatcacagccagctttgaggagc 71
