miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00716;mir-3;AADE01001895.1/2973-3045 46245:Drosophila
pseudoobscura pseudoobscura
Length = 73
Score = 145 bits (73), Expect = 8e-35
Identities = 73/73 (100%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcattttgtgcagttatgtctacgtgatcatcctcatcactgggcaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatcctgggatgcattttgtgcagttatgtctacgtgatcatcctcatcactgggcaaag 60
Query: 61 tgtgtctcaggat 73
|||||||||||||
Sbjct: 61 tgtgtctcaggat 73
>RF00716;mir-3;AAQB01006291.1/71735-71659 7260:Drosophila
willistoni
Length = 77
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/68 (89%), Gaps = 4/68 (5%)
Strand = Plus / Plus
Query: 6 tgggatgcattttgtgcagttatgtct--acgtgatcat--cctcatcactgggcaaagt 61
||||||||||||||||||||||||||| | ||||| || ||||||||||||||||||
Sbjct: 6 tgggatgcattttgtgcagttatgtcttcatgtgataattctctcatcactgggcaaagt 65
Query: 62 gtgtctca 69
||||||||
Sbjct: 66 gtgtctca 73
>RF00716;mir-3;AAPP01018770.1/56641-56712 7217:Drosophila
ananassae
Length = 72
Score = 56.0 bits (28), Expect = 6e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 catcactgggcaaagtgtgtctcaggat 73
||||||||||||||||||||||||||||
Sbjct: 45 catcactgggcaaagtgtgtctcaggat 72
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcattttgtgcagttatg 29
|||| ||||| ||||||||||||||||||
Sbjct: 1 gatcttgggacgcattttgtgcagttatg 29
>RF00716;mir-3;AASW01005437.1/411-478 7240:Drosophila simulans
Length = 68
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcattttgtgcagttatgt 30
||||||||||||||| ||||||||||||||
Sbjct: 1 gatcctgggatgcatcttgtgcagttatgt 30
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 catcactgggcaaagtgtgtctca 69
||||||||||||||||||||||||
Sbjct: 41 catcactgggcaaagtgtgtctca 64
>RF00716;mir-3;AAPT01006453.1/2658-2730 7222:Drosophila grimshawi
Length = 73
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 catcactgggcaaagtgtgtctca 69
||||||||||||||||||||||||
Sbjct: 46 catcactgggcaaagtgtgtctca 69
>RF00716;mir-3;AANI01014795.1/39022-39093 7244:Drosophila virilis
Length = 72
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 catcactgggcaaagtgtgtctca 69
||||||||||||||||||||||||
Sbjct: 45 catcactgggcaaagtgtgtctca 68
>RF00716;mir-3;AAPU01010225.1/183837-183766 7230:Drosophila
mojavensis
Length = 72
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 46 catcactgggcaaagtgtgtctca 69
||||||||||||||||||||||||
Sbjct: 45 catcactgggcaaagtgtgtctca 68
