miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;ABXC01004530.1/55208-55296 4558:Sorghum bicolor
(sorghum)
Length = 89
Score = 81.8 bits (41), Expect = 2e-15
Identities = 82/94 (87%), Gaps = 5/94 (5%)
Strand = Plus / Plus
Query: 7 atgtgcctggctccctgtatgccactcatctagagcaacgacagcttggtatggttgcct 66
|||||||||||||||||||||||||||||||||| || ||| || |||||||||||
Sbjct: 1 atgtgcctggctccctgtatgccactcatctagatca---acaactacctatggttgcct 57
Query: 67 ataagatggatggcgtgcatggtgccaagcatat 100
|| ||||| ||||||||| ||||||||||||||
Sbjct: 58 at--gatggttggcgtgcacggtgccaagcatat 89
>RF00247;mir-160;AAAA02022910.1/14752-14660 39946:Oryza sativa
Indica Group
Length = 93
Score = 77.8 bits (39), Expect = 3e-14
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 7 atgtgcctggctccctgtatgccactcatctagagcaac 45
|||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgtgcctggctccctgtatgccactcatctagagcaac 39
>RF00247;mir-160;EU798771.1/193-98 58934:Zizania latifolia
Length = 96
Score = 69.9 bits (35), Expect = 6e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 7 atgtgcctggctccctgtatgccactcatctagagcaac 45
|||||||||||||||||||||||||||||| ||||||||
Sbjct: 1 atgtgcctggctccctgtatgccactcatccagagcaac 39
>RF00247;mir-160;AAAA02020747.1/14884-14971 39946:Oryza sativa
Indica Group
Length = 88
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 9 gtgcctggctccctgtatgccactcat 35
|||||||||||||||||||||||||||
Sbjct: 3 gtgcctggctccctgtatgccactcat 29
>RF00247;mir-160;AAAA02005231.1/55127-55040 39946:Oryza sativa
Indica Group
Length = 88
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 8 tgtgcctggctccctgtatgccactcatctagagcaac 45
|||||||||||||||||||||||| ||| |||| ||||
Sbjct: 2 tgtgcctggctccctgtatgccacacatgtagaccaac 39
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 8 tgtgcctggctccctgtatgccact 32
|||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccact 26
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 atgtgcctggctccctgtatgcca 30
||||||||||||||||||||||||
Sbjct: 1 atgtgcctggctccctgtatgcca 24
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 atgtgcctggctccctgtatgcca 30
||||||||||||||||||||||||
Sbjct: 1 atgtgcctggctccctgtatgcca 24
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 atgtgcctggctccctgtatgcca 30
||||||||||||||||||||||||
Sbjct: 1 atgtgcctggctccctgtatgcca 24
>RF00247;mir-160;CAAP02006197.1/486-575 29760:Vitis vinifera
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgtgcctggctccctgtatgccac 31
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>RF00247;mir-160;FM878703.1/301-387 213592:Musa acuminata subsp.
burmannicoides
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgtgcctggctccctgtatgccac 31
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>RF00247;mir-160;EU975926.1/304-390 4577:Zea mays
Length = 87
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgtgcctggctccctgtatgccac 31
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>RF00247;mir-160;EU945131.1/219-303 4577:Zea mays
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccactc 33
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccactc 27
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccactc 33
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccactc 27
>RF00247;mir-160;ABXC01000819.1/394312-394212 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccactc 33
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccactc 27
>RF00247;mir-160;ABXC01002436.1/220577-220488 4558:Sorghum bicolor
(sorghum)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 tgtgcctggctccctgtatgccac 31
||||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgccac 25
>RF00247;mir-160;AAAA02011132.1/25365-25500 39946:Oryza sativa
Indica Group
Length = 136
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccactc 33
||||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccactc 27
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgtgcctggctccctgtatgcca 30
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;Z97344.2/54320-54406 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gtgcctggctccctgtatgccac 31
|||||||||||||||||||||||
Sbjct: 3 gtgcctggctccctgtatgccac 25
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgtgcctggctccctgtatgcca 30
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 tgtgcctggctccctgtatgcca 30
|||||||||||||||||||||||
Sbjct: 2 tgtgcctggctccctgtatgcca 24
>RF00247;mir-160;EU974767.1/328-419 4577:Zea mays
Length = 92
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 9 gtgcctggctccctgtatgccac 31
|||||||||||||||||||||||
Sbjct: 3 gtgcctggctccctgtatgccac 25
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccact 32
|||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccact 26
>RF00247;mir-160;ABIM01022486.1/4654-4741 3649:Carica papaya
(papaya)
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccac 31
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AC189245.2/87285-87372 51351:Brassica rapa subsp.
pekinensis
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccac 31
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AC183492.1/98297-98383 3712:Brassica oleracea
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccac 31
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;EU548646.1/366-280 3702:Arabidopsis thaliana
(thale cress)
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccac 31
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AARH01000886.1/36098-36187 3694:Populus
trichocarpa
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccac 31
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;AY728424.1/1-89 3694:Populus trichocarpa
Length = 89
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccac 31
||||||||||||||||||||||
Sbjct: 3 tgcctggctccctgtatgccac 24
>RF00247;mir-160;AASG02024242.1/1209-1298 3988:Ricinus communis
(castor bean)
Length = 90
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccac 31
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
>RF00247;mir-160;ABEU01007064.1/27442-27356 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 tgcctggctccctgtatgccac 31
||||||||||||||||||||||
Sbjct: 4 tgcctggctccctgtatgccac 25
