miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>36894_dpe-mir-318:mirbase
Length = 68
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 tttatgggatgcaccaagttcagttttgtcacatttcgagcatcactgggctttgtttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tttatgggatgcaccaagttcagttttgtcacatttcgagcatcactgggctttgtttat 60
Query: 61 ctcataag 68
||||||||
Sbjct: 61 ctcataag 68
>37475_dwi-mir-318-2:mirbase
Length = 69
Score = 91.7 bits (46), Expect = 6e-20
Identities = 64/69 (92%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 1 tttatgggatgcaccaagttcagttttgtcacatttc--gagcatcactgggctttgttt 58
|||||||||| ||||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcgcattccacgagcatcactgggctttgttt 60
Query: 59 atctcataa 67
|||||||||
Sbjct: 61 atctcataa 69
>36229_der-mir-318:mirbase
Length = 68
Score = 89.7 bits (45), Expect = 2e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 1 tttatgggatgcaccaagttcagttttgtcacatttcgagcatcactgggctttgtttat 60
|||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
Query: 61 ctcat 65
|||||
Sbjct: 61 ctcat 65
>36312_dgr-mir-318:mirbase
Length = 69
Score = 89.7 bits (45), Expect = 2e-19
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatgcaccaagttcagttttgtcacatttcga-gcatcactgggctttgttta 59
|||||||||| |||||||||||||||||||| || || | ||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
Query: 60 tctcataag 68
|||||||||
Sbjct: 61 tctcataag 69
>36473_dme-mir-318:mirbase
Length = 68
Score = 89.7 bits (45), Expect = 2e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 1 tttatgggatgcaccaagttcagttttgtcacatttcgagcatcactgggctttgtttat 60
|||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
Query: 61 ctcat 65
|||||
Sbjct: 61 ctcat 65
>36474_dme-mir-318:mirbase
Length = 68
Score = 89.7 bits (45), Expect = 2e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 1 tttatgggatgcaccaagttcagttttgtcacatttcgagcatcactgggctttgtttat 60
|||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
Query: 61 ctcat 65
|||||
Sbjct: 61 ctcat 65
>37185_dse-mir-318:mirbase
Length = 68
Score = 89.7 bits (45), Expect = 2e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 1 tttatgggatgcaccaagttcagttttgtcacatttcgagcatcactgggctttgtttat 60
|||||||||| ||| ||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacacttcaagcatcactgggctttgtttat 60
Query: 61 ctcat 65
|||||
Sbjct: 61 ctcat 65
>37397_dvi-mir-318:mirbase
Length = 69
Score = 89.7 bits (45), Expect = 2e-19
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatgcaccaagttcagttttgtcacatttcga-gcatcactgggctttgttta 59
|||||||||| |||||||||||||||||||| || || | ||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
Query: 60 tctcataag 68
|||||||||
Sbjct: 61 tctcataag 69
>37474_dwi-mir-318-1:mirbase
Length = 71
Score = 89.7 bits (45), Expect = 2e-19
Identities = 63/68 (92%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 1 tttatgggatgcaccaagttcagttttgtcacatttc--gagcatcactgggctttgttt 58
|||||||||| ||||||||||||||||||| |||| | |||||||||||||||||||||
Sbjct: 1 tttatgggatacaccaagttcagttttgtcgcattccacgagcatcactgggctttgttt 60
Query: 59 atctcata 66
||||||||
Sbjct: 61 atctcata 68
>36818_dmo-mir-318:mirbase
Length = 69
Score = 81.8 bits (41), Expect = 5e-17
Identities = 63/69 (91%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 tttatgggatgcaccaagttcagttttgtcacatttcga-gcatcactgggctttgttta 59
|||||||||| ||| |||||||||||||||| || || | ||||||||||||||||||||
Sbjct: 1 tttatgggatacactaagttcagttttgtcagatgtccaagcatcactgggctttgttta 60
Query: 60 tctcataag 68
|||||||||
Sbjct: 61 tctcataag 69
>37261_dsi-mir-318:mirbase
Length = 68
Score = 81.8 bits (41), Expect = 5e-17
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 1 tttatgggatgcaccaagttcagttttgtcacatttcgagcatcactgggctttgtttat 60
|||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcacactttaagcatcactgggctttgtttat 60
Query: 61 ctcat 65
|||||
Sbjct: 61 ctcat 65
>37556_dya-mir-318:mirbase
Length = 68
Score = 73.8 bits (37), Expect = 1e-14
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 1 tttatgggatgcaccaagttcagttttgtcacatttcgagcatcactgggctttgtttat 60
|||||||||| ||| |||||||||||||| || | | ||||||||||||||||||||||
Sbjct: 1 tttatgggatacacacagttcagttttgtcgcactacaagcatcactgggctttgtttat 60
Query: 61 ctcat 65
|||||
Sbjct: 61 ctcat 65
>36147_dan-mir-318:mirbase
Length = 69
Score = 71.9 bits (36), Expect = 5e-14
Identities = 49/52 (94%), Gaps = 1/52 (1%)
Strand = Plus / Plus
Query: 18 gttcagttttgtcacattt-cgagcatcactgggctttgtttatctcataag 68
|||||||| |||||| ||| ||||||||||||||||||||||||||||||||
Sbjct: 18 gttcagttgtgtcacttttgcgagcatcactgggctttgtttatctcataag 69
