miRNEST 2.0, an integrative microRNA resource :: BLAST
>54691_tae-miR444:pmrd
Length = 426
Score = 103 bits (52), Expect = 4e-23
Identities = 61/64 (95%)
Strand = Plus / Plus
Query: 108 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcccttt 167
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 122 catacttgtggctttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcccttt 181
Query: 168 gcca 171
||||
Sbjct: 182 gcca 185
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 14 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaagta 64
|||| ||||| |||||||| |||||||| ||||||||||||| ||||||||
Sbjct: 174 ggcagcaagcttgaggcagcaactgcatgacttgcaagaaagccacaagta 124
>54376_pvi-miR444:pmrd
Length = 127
Score = 93.7 bits (47), Expect = 4e-20
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 120 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 170
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 77 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 127
Score = 40.1 bits (20), Expect = 5e-04
Identities = 32/36 (88%)
Strand = Plus / Minus
Query: 120 tttcttgcaagttgtgcagttgttgcctcaagcttg 155
||||||||||| | |||||||| |||||| ||||||
Sbjct: 50 tttcttgcaagatatgcagttgctgcctctagcttg 15
>49007_osa-miR444f:pmrd
Length = 154
Score = 89.7 bits (45), Expect = 6e-19
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 119 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 163
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 153
Score = 54.0 bits (27), Expect = 4e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 9 atggtggcaccaagcatgaggcaggaactgcattacttgcaag 51
||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 atggtggcaccaagcatgaggttacaactgcattacttgcaag 43
Score = 42.1 bits (21), Expect = 1e-04
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 14 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtca 58
|||| ||||| ||||||| ||||||| ||||||||||||||||
Sbjct: 150 ggcagcaagcttgaggcaacaactgcacaacttgcaagaaagtca 106
>48798_oru-miR444:pmrd
Length = 165
Score = 89.7 bits (45), Expect = 6e-19
Identities = 45/45 (100%)
Strand = Plus / Plus
Query: 119 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 163
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
Score = 63.9 bits (32), Expect = 4e-11
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 4 tgcatatggtggcaccaagcatgaggcaggaactgcattacttgcaag 51
|||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 1 tgcatatggtggcaccaagcatgaggttacaactgcattacttgcaag 48
Score = 42.1 bits (21), Expect = 1e-04
Identities = 39/45 (86%)
Strand = Plus / Minus
Query: 14 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtca 58
|||| ||||| ||||||| ||||||| ||||||||||||||||
Sbjct: 155 ggcagcaagcttgaggcaacaactgcacaacttgcaagaaagtca 111
>54743_tae-miR2024b:pmrd
Length = 142
Score = 87.7 bits (44), Expect = 3e-18
Identities = 53/56 (94%)
Strand = Plus / Plus
Query: 108 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 163
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 87 catacttgtggctttcttgcaagtcatgcagttgctgcctcaagcttgctgcctcc 142
Score = 61.9 bits (31), Expect = 1e-10
Identities = 46/51 (90%)
Strand = Plus / Minus
Query: 14 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaagta 64
|||| ||||| |||||||| |||||||| ||||||||||||| ||||||||
Sbjct: 139 ggcagcaagcttgaggcagcaactgcatgacttgcaagaaagccacaagta 89
Score = 46.1 bits (23), Expect = 9e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 14 ggcaccaagcatgaggcaggaactgcattacttgc 48
|||||| ||||||||||| |||||||||||||||
Sbjct: 4 ggcaccgagcatgaggcaacaactgcattacttgc 38
>54742_tae-miR2024a:pmrd
Length = 118
Score = 67.9 bits (34), Expect = 2e-12
Identities = 83/98 (84%), Gaps = 1/98 (1%)
Strand = Plus / Plus
Query: 66 actgcattacttgcaagaaagtcacaaaatccattgcaagatcatacttgtggctttctt 125
||||||||||||||||| |||| |||||||| || | |||||| | ||| ||||||
Sbjct: 22 actgcattacttgcaaggaagttacaaaatctatgggtc-atcataatcgtgactttctc 80
Query: 126 gcaagttgtgcagttgttgcctcaagcttgctgcctcc 163
|||||||||||||||| || ||||||||||||| ||||
Sbjct: 81 gcaagttgtgcagttgctgtctcaagcttgctgactcc 118
Score = 56.0 bits (28), Expect = 9e-09
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 14 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 61
||||||||||||||||| |||||||||||||||||| |||| ||||
Sbjct: 1 ggcaccaagcatgaggcgacaactgcattacttgcaaggaagttacaa 48
>55114_zma-miR444a:pmrd
Length = 138
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 143 tgcctcaagcttgctgcctccctttgcca 171
|||||||||||||||||||||||||||||
Sbjct: 5 tgcctcaagcttgctgcctccctttgcca 33
>55115_zma-miR444b:pmrd
Length = 174
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 143 tgcctcaagcttgctgcctccctttgcca 171
|||||||||||| ||||||||||||||||
Sbjct: 5 tgcctcaagcttcctgcctccctttgcca 33
>49006_osa-miR444e:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 2e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 126 gcaagttgtgcagttgttgcctcaagcttgctgcct 161
||||||| |||||||| |||||||||||| ||||||
Sbjct: 91 gcaagttatgcagttgctgcctcaagcttactgcct 126
>48319_bdi-miR444:pmrd
Length = 110
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 128 aagttgtgcagttgttgcctcaagcttgctgc 159
||||| |||||||| |||||||||||||||||
Sbjct: 79 aagttatgcagttgctgcctcaagcttgctgc 110
