miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;BT056134.1/436-541 4577:Zea mays
Length = 106
Score = 210 bits (106), Expect = 4e-54
Identities = 106/106 (100%)
Strand = Plus / Plus
Query: 16 gttagggggattgttgtctggctcggtgtctccggtcgagacggccttgccggcgccgga 75
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gttagggggattgttgtctggctcggtgtctccggtcgagacggccttgccggcgccgga 60
Query: 76 gctgtcgtcgaccggagatctcggaccaggcttcaatccctttaac 121
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gctgtcgtcgaccggagatctcggaccaggcttcaatccctttaac 106
>RF00075;mir-166;ABXC01002961.1/62223-62119 4558:Sorghum bicolor
(sorghum)
Length = 105
Score = 115 bits (58), Expect = 2e-25
Identities = 95/106 (89%), Gaps = 1/106 (0%)
Strand = Plus / Plus
Query: 16 gttagggggattgttgtctggctcggtgtctccggtcgagacggccttgccggcgccgga 75
|||||||||||||||||||||||||| |||||||||||||| ||||| | ||||||
Sbjct: 1 gttagggggattgttgtctggctcggggtctccggtcgagaat-ccttggccttgccgga 59
Query: 76 gctgtcgtcgaccggagatctcggaccaggcttcaatccctttaac 121
| |||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 60 gttgtcgttgaccggagatttcggaccaggcttcaatccctttaac 105
>RF00075;mir-166;ABXC01001421.1/165860-165981 4558:Sorghum bicolor
(sorghum)
Length = 122
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 92 gatctcggaccaggcttcaatccctttaac 121
||||||||||||||||||||||||||||||
Sbjct: 93 gatctcggaccaggcttcaatccctttaac 122
>RF00075;mir-166;AY551232.1/7-113 4530:Oryza sativa (rice)
Length = 107
Score = 60.0 bits (30), Expect = 8e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 92 gatctcggaccaggcttcaatccctttaac 121
||||||||||||||||||||||||||||||
Sbjct: 78 gatctcggaccaggcttcaatccctttaac 107
>RF00075;mir-166;AP004125.3/115130-115014 39947:Oryza sativa
Japonica Group
Length = 117
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 95 ctcggaccaggcttcaatccctttaac 121
|||||||||||||||||||||||||||
Sbjct: 91 ctcggaccaggcttcaatccctttaac 117
>RF00075;mir-166;AAAA02007467.1/8861-8977 39946:Oryza sativa Indica
Group
Length = 117
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 95 ctcggaccaggcttcaatccctttaac 121
|||||||||||||||||||||||||||
Sbjct: 91 ctcggaccaggcttcaatccctttaac 117
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 89 ggagatctcggaccaggcttcaatccc 115
|||||||||||||||||||||| ||||
Sbjct: 87 ggagatctcggaccaggcttcattccc 113
>RF00075;mir-166;AAAA02025700.1/14722-14582 39946:Oryza sativa
Indica Group
Length = 141
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 95 ctcggaccaggcttcaatccctttaac 121
|||||||||||||||| ||||||||||
Sbjct: 115 ctcggaccaggcttcattccctttaac 141
>RF00075;mir-166;AACV01018689.1/7378-7519 39947:Oryza sativa
Japonica Group
Length = 142
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 95 ctcggaccaggcttcaatccctttaac 121
|||||||||||||||| ||||||||||
Sbjct: 116 ctcggaccaggcttcattccctttaac 142
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 90 gagatctcggaccaggcttcaatccc 115
||||||||||||||||||||| ||||
Sbjct: 87 gagatctcggaccaggcttcattccc 112
