miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00725;mir-iab-4;AAPU01010953.1/219687-219770 7230:Drosophila
mojavensis
Length = 84
Score = 159 bits (80), Expect = 8e-39
Identities = 83/84 (98%)
Strand = Plus / Minus
Query: 6 gtgtttcctcgtgttacgtatactgaaggtataccggataggatacactcaggatacatt 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 gtgtttcctcgtgttacgtatactgaaggtataccggataggatacactcaggatacatt 25
Query: 66 cagtatacgtatacgaagtcgcac 89
||||||||||||||||||| ||||
Sbjct: 24 cagtatacgtatacgaagttgcac 1
>RF00725;mir-iab-4;AAJJ01001135.1/10616-10533 7070:Tribolium
castaneum (red flour beetle)
Length = 84
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Minus
Query: 12 cctcgtgttacgtatactgaaggtataccggataggatacactcaggatacattcagtat 71
|||| ||||||||||||||||||||||||||| || | ||||||||||||||||||||||
Sbjct: 78 cctcctgttacgtatactgaaggtataccggacagaaaacactcaggatacattcagtat 19
Query: 72 acgta 76
|||||
Sbjct: 18 acgta 14
>RF00725;mir-iab-4;ABKP02025153.1/22654-22737 377271:Anopheles
gambiae M
Length = 84
Score = 87.7 bits (44), Expect = 2e-17
Identities = 59/64 (92%)
Strand = Plus / Minus
Query: 12 cctcgtgttacgtatactgaaggtataccggataggatacactcaggatacattcagtat 71
|||| ||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct: 78 cctcttgttacgtatactgaaggtataccggataagtagcactcaggatacattcagtat 19
Query: 72 acgt 75
||||
Sbjct: 18 acgt 15
>RF00725;mir-iab-4;AADK01004318.1/3463-3550 7091:Bombyx mori
(domestic silkworm)
Length = 88
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/64 (87%), Gaps = 4/64 (6%)
Strand = Plus / Minus
Query: 17 tgttacgtatactgaaggtataccggatagga----tacactcaggatacattcagtata 72
||||||||||||||||||||||||||| | || ||||||||||||||||||||||
Sbjct: 77 tgttacgtatactgaaggtataccggacaagaatcgcgcactcaggatacattcagtata 18
Query: 73 cgta 76
||||
Sbjct: 17 cgta 14
>RF00725;mir-iab-4;ABJB010512107.1/48251-48167 6945:Ixodes
scapularis (black-legged tick)
Length = 85
Score = 60.0 bits (30), Expect = 5e-09
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Minus
Query: 18 gttacgtatactgaaggtataccgg-ataggatacactcaggatacattcagtatacg 74
||||||||||||||||||||||||| | | | |||||||||||||| ||||||||||
Sbjct: 73 gttacgtatactgaaggtataccggaaaattaaacactcaggatacactcagtatacg 16
>RF00725;mir-iab-4;ABLF01001794.1/37283-37372 7029:Acyrthosiphon
pisum (pea aphid)
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 17 tgttacgtatactgaaggtataccgga 43
|||||||||||||||||||||||||||
Sbjct: 79 tgttacgtatactgaaggtataccgga 53
