miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00716;mir-3;AASW01005437.1/411-478 7240:Drosophila simulans
Length = 68
Score = 127 bits (64), Expect = 2e-29
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcatcttgtgcagttatgtttcaatctcacatcactgggcaaagtgtgt 60
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 gatcctgggatgcatcttgtgcagttatgttccaatctcacatcactgggcaaagtgtgt 60
Query: 61 ctcaagat 68
||||||||
Sbjct: 61 ctcaagat 68
>RF00716;mir-3;AADE01001895.1/2973-3045 46245:Drosophila
pseudoobscura pseudoobscura
Length = 73
Score = 52.0 bits (26), Expect = 9e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 gatcctgggatgcatcttgtgcagttatgt 30
||||||||||||||| ||||||||||||||
Sbjct: 1 gatcctgggatgcattttgtgcagttatgt 30
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 catcactgggcaaagtgtgtctca 64
||||||||||||||||||||||||
Sbjct: 46 catcactgggcaaagtgtgtctca 69
>RF00716;mir-3;AAQB01006291.1/71735-71659 7260:Drosophila
willistoni
Length = 77
Score = 50.1 bits (25), Expect = 3e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 36 tctcacatcactgggcaaagtgtgtctca 64
|||| ||||||||||||||||||||||||
Sbjct: 45 tctctcatcactgggcaaagtgtgtctca 73
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 6 tgggatgcatcttgtgcagttatgt 30
|||||||||| ||||||||||||||
Sbjct: 6 tgggatgcattttgtgcagttatgt 30
>RF00716;mir-3;AAPT01006453.1/2658-2730 7222:Drosophila grimshawi
Length = 73
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 catcactgggcaaagtgtgtctcaa 65
|||||||||||||||||||||||||
Sbjct: 46 catcactgggcaaagtgtgtctcaa 70
>RF00716;mir-3;AANI01014795.1/39022-39093 7244:Drosophila virilis
Length = 72
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 catcactgggcaaagtgtgtctcaa 65
|||||||||||||||||||||||||
Sbjct: 45 catcactgggcaaagtgtgtctcaa 69
>RF00716;mir-3;AAPU01010225.1/183837-183766 7230:Drosophila
mojavensis
Length = 72
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 41 catcactgggcaaagtgtgtctcaa 65
|||||||||||||||||||||||||
Sbjct: 45 catcactgggcaaagtgtgtctcaa 69
>RF00716;mir-3;AAPP01018770.1/56641-56712 7217:Drosophila
ananassae
Length = 72
Score = 48.1 bits (24), Expect = 1e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 41 catcactgggcaaagtgtgtctca 64
||||||||||||||||||||||||
Sbjct: 45 catcactgggcaaagtgtgtctca 68
