miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00241;mir-8;AAPU01010182.1/5430-5508 7230:Drosophila mojavensis
          Length = 79

 Score =  133 bits (67), Expect = 4e-31
 Identities = 76/79 (96%)
 Strand = Plus / Plus

                                                                      
Query: 7  atctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtc 66
          |||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||
Sbjct: 1  atctgttcacatcttaccgggcagcattagattcctgttttaaataactctaatactgtc 60

                             
Query: 67 aggtaaagatgtcgtccgt 85
          |||||||||||||||||||
Sbjct: 61 aggtaaagatgtcgtccgt 79




>RF00241;mir-8;AAQB01006282.1/186530-186609 7260:Drosophila
          willistoni
          Length = 80

 Score = 87.7 bits (44), Expect = 2e-17
 Identities = 72/80 (90%), Gaps = 1/80 (1%)
 Strand = Plus / Plus

                                                                      
Query: 7  atctgttcacatcttaccgggcagcattagattct-tgatttaaataattctaatactgt 65
          ||||||||||||||||||||||||||||||||| | |  | || |||  |||||||||||
Sbjct: 1  atctgttcacatcttaccgggcagcattagattttgtactatagatatctctaatactgt 60

                              
Query: 66 caggtaaagatgtcgtccgt 85
          ||||||||||||||||||||
Sbjct: 61 caggtaaagatgtcgtccgt 80




>RF00241;mir-8;AAZO01008551.1/16828-16905 121224:Pediculus humanus
          corporis (human body louse)
          Length = 78

 Score = 79.8 bits (40), Expect = 5e-15
 Identities = 64/71 (90%), Gaps = 2/71 (2%)
 Strand = Plus / Plus

                                                                      
Query: 9  ctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtcag 68
          ||||| |||||||||||||||||||||||||  |  ||||| ||||||||||||||||||
Sbjct: 3  ctgtttacatcttaccgggcagcattagattgat--tttaagtaattctaatactgtcag 60

                     
Query: 69 gtaaagatgtc 79
          |||| ||||||
Sbjct: 61 gtaatgatgtc 71




>RF00241;mir-8;AAAB01008986.1/3020387-3020310 180454:Anopheles
          gambiae str. PEST
          Length = 78

 Score = 73.8 bits (37), Expect = 3e-13
 Identities = 68/77 (88%), Gaps = 1/77 (1%)
 Strand = Plus / Plus

                                                                      
Query: 8  tctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtca 67
          |||||||||||||||||||||||||||||||   | | |   ||| ||||||||||||||
Sbjct: 2  tctgttcacatcttaccgggcagcattagatatgtta-tcggatatttctaatactgtca 60

                           
Query: 68 ggtaaagatgtcgtccg 84
          |||||||||||||||||
Sbjct: 61 ggtaaagatgtcgtccg 77




>RF00241;mir-8;BAAB01175925.1/123-47 7091:Bombyx mori (domestic
          silkworm)
          Length = 77

 Score = 67.9 bits (34), Expect = 2e-11
 Identities = 66/74 (89%), Gaps = 2/74 (2%)
 Strand = Plus / Plus

                                                                      
Query: 11 gttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtcaggt 70
          |||| |||||||||||||||||||||| || || | || ||  |||||||||||||||||
Sbjct: 5  gttcgcatcttaccgggcagcattagagtcctg-tctatatt-ttctaatactgtcaggt 62

                        
Query: 71 aaagatgtcgtccg 84
          ||||||||||||||
Sbjct: 63 aaagatgtcgtccg 76




>RF00241;mir-8;AADG05004155.1/1299-1373 7460:Apis mellifera (honey
          bee)
          Length = 75

 Score = 65.9 bits (33), Expect = 8e-11
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                           
Query: 7  atctgttcacatcttaccgggcagcattagatt 39
          |||||||||||||||||||||||||||||||||
Sbjct: 1  atctgttcacatcttaccgggcagcattagatt 33




>RF00241;mir-8;AAJJ01001355.1/29616-29540 7070:Tribolium castaneum
          (red flour beetle)
          Length = 77

 Score = 65.9 bits (33), Expect = 8e-11
 Identities = 67/76 (88%), Gaps = 3/76 (3%)
 Strand = Plus / Plus

                                                                      
Query: 9  ctgttcacatcttaccgggcagcattagattcttgatttaaataattctaatactgtcag 68
          ||||| ||||||||||||||||||||||||  |  ||||  ||| |||||||||||||||
Sbjct: 3  ctgttaacatcttaccgggcagcattagat--tacattt-tatacttctaatactgtcag 59

                          
Query: 69 gtaaagatgtcgtccg 84
          ||||||||||| ||||
Sbjct: 60 gtaaagatgtcctccg 75




>RF00241;mir-8;ABJB010621523.1/197-271 6945:Ixodes scapularis
          (black-legged tick)
          Length = 75

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                    
Query: 54 ttctaatactgtcaggtaaagatgtc 79
          ||||||||||||||||||||||||||
Sbjct: 43 ttctaatactgtcaggtaaagatgtc 68